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Protein Overview: gi|326429

General Information:
Name(s) found: gi|326429 [NCBI NR]
Description(s) found:
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  • gi|326429|gb|AAA44220.1| vpu [NCBI NR]
  • VPU protein (U ORF protein)gi|326429|gb|AAA44220.1| vpu [nrdb_11152004_Chlamydomonas]
  • vpu [nr-271106-contam.fasta]
    • Organism: Human immunodeficiency virus 1
    Length: 82 amino acids

    Gene Ontology:
    Cellular Component: endoplasmic reticulum membrane [UNKNOWNLink to PubMed article]
    cytosol [UNKNOWNLink to PubMed articleLink to PubMed articleLink to PubMed article][TAS]
    nucleoplasm [TAS]
    Biological Process: uncoating of virus [TAS]
    entry into host cell [TAS]
    viral reproduction [TAS]
    provirus integration [UNKNOWNLink to PubMed article][TAS]
    RNA-dependent DNA replication [TAS]
    initiation of viral infection [UNKNOWNLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPLQISAIV ALVVAAIIAI VVWSIALLEY RKLLRQRKID RLIDRIRERA EDSGNESEGD  60
   61 QEELSALVEM GGHDAPWDID DL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..82] Pfam 45.744727 No description for PF00558.10 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle