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Protein Overview: gi|45773942, gi|...

General Information:
Name(s) found: gi|45773942 [NCBI NR]
gi|30693047 [NCBI NR]
Description(s) found:
Found 9 descriptions.
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  • gi|45773942|gb|AAS76775.1| At1g34360 [Arabidopsis thaliana] [NCBI NR]
  • gi|30693047|ref|NP_174696.2| translation initiation factor 3 (IF-3) family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 520 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: translational initiation [IEA][ISS]
    Molecular Function: translation initiation factor activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIWRIINRS YLKYASNQLT RNYYTQVCLA SSTHVVKQTT KLSSFDIPNS DICTRPSNIF  60
   61 QNLRFLATSA QTRKKEAEVD SDGPRLNEKI TGDYVRLVSE EGHCVVSLRE ALRRAKELQC 120
  121 DLVEVQRDAK PPVCKIVKYS LELYKKAKVG KERAKAKRAE AIRPDIKEIR FTPKIEAKDL 180
  181 KFKSDQALKL MESGYRVKCL AVPDKDKHKE LEPEKLLELL FRFTCFIGDA LVESWPEADR 240
  241 KGAVVIVRHA KFGPPKKGGV KLMKDIDIKS ARVKEESPKP DSSKAGVATV DDQEDIEKSE 300
  301 PRFSVEQAQP VKFQNAYAKR EPSSEFSGGR DASRFEPQSP NQHVNPQRPR FSNQAPNQQP 360
  361 TGRFDPQSPN QPPSAPRPQF PNQQPTGRFD PQFPSQPPRP QFPNQAPNQQ STGRFNPQFP 420
  421 NQRPSPPQSR FPDQAPNQQP SGPSPNRHPD RQGPPPRFQN QAPNQQPTGR FEPQPPNPPR 480
  481 APPRPQTRLP NETSNEQPTA PGRSSGPASG YGIFSTPKTK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..159] PSI-BLAST 33.154902 TRANSLATION INITIATION FACTOR 3 N-TERMINAL DOMAIN
    2 View Details [160..254] PSI-BLAST 25.39794 TRANSLATION INITIATION FACTOR 3 C-TERMINAL DOMAIN
    3 View Details [255..429] PSI-BLAST 3.30103 Sec24
    4 View Details [430..520] FFAS03 1.17 Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.958050251236155 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.48141200069821 bayes_pls_golite062009
  • translation regulator activity
    		•  0.34945991551838 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  0.34884152020441 bayes_pls_golite062009
  • translation initiation factor activity
    		•  0.340496260605169 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle