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Protein Overview: FY_ARATH

General Information:
Name(s) found: FY_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|79512802|ref|NP_196852.3| FY; protein binding [Arabidopsis thaliana] [NCBI NR]
  • gi|45773816|gb|AAS76712.1| At5g13480 [Arabidopsis thaliana] [NCBI NR]
  • Flowering time control protein FY OS=Arabidopsis thaliana GN=FY PE=1 SV=1 [Swiss-Prot]
  • At5g13480 [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Similar to WD-40 repeat family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: FY | FY | chr5:4326641-4331560 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • FY (FY) [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: FY | Transducin/WD40 repeat-like superfamily protein | chr5:4326638-4331557 REVERSE LENGTH=647 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 647 amino acids

    Gene Ontology:
    Cellular Component: CUL4 RING ubiquitin ligase complex [IPI]
    Biological Process: regulation of flower development [IMP]
    embryonic development ending in seed dormancy [IMP]
    mRNA processing [IGI]
    Molecular Function: protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYAGGDMHRG SQMPQPPMMR QSSASSTNIN PDYHHPSGPF DPNVDSFGAK RMRKHTQRRA  60
   61 VDYTSTVVRY IQARTWQRDS RDRTTLQPTP AAAVDMLPTV AYSDNPSTSF AAKFVHASLN 120
  121 KNRCSINRVL WTPSGRRLIT GSQSGEFTLW NGQSFNFEMI LQAHDQPIRS MVWSHNENYM 180
  181 VSGDDGGTLK YWQNNMNNVK ANKTAHKESI RDLSFCKTDL KFCSCSDDTT VKVWDFTKCV 240
  241 DESSLTGHGW DVKSVDWHPT KSLLVSGGKD QLVKLWDTRS GRELCSLHGH KNIVLSVKWN 300
  301 QNGNWLLTAS KDQIIKLYDI RTMKELQSFR GHTKDVTSLA WHPCHEEYFV SGSSDGSICH 360
  361 WIVGHENPQI EIPNAHDNSV WDLAWHPIGY LLCSGSNDHT TKFWCRNRPA DNPRDVLMQN 420
  421 QGYNEQGFGR QPDNFQPSEA SPIPGAFVPG LTRNEGTIPG IGIAMPFDAS SQGDHKQPLP 480
  481 GSMALGAPPL PPGPHPSLLG SGQQQGYQQQ QQHQGHPQQM LPMPNMPHHQ LPPSSHMPLH 540
  541 PHHLPRPMQM PPHGHMPPPS MPMSHQMPGS MGMQGGMNPQ MSQSHFMGAP SGVFQGQPNS 600
  601 GGPQMYPQGR GGFNRPQMIP GYNNPFQQQQ QPPLPPGPPP NNNQQHQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..105] deduced N/A No confident structure predictions are available.
    2 View Details [106..216] PSI-BLAST 93.30103 No description for 2gnqA was found.
    3 View Details [217..589] PSI-BLAST 30.522879 No description for 2qxvA was found.
    4 View Details [590..647] MSA 1.198994 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle