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Protein Overview: gi|45752644, gi|...

General Information:
Name(s) found: gi|45752644 [NCBI NR]
gi|240255874 [NCBI NR]
Description(s) found:
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  • gi|45752644|gb|AAS76220.1| At4g15770 [Arabidopsis thaliana] [NCBI NR]
  • gi|240255874|ref|NP_193312.5| RNA binding / protein binding [Arabidopsis thaliana] [NCBI NR]
  • At4g15770 [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 At4g15770 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | RNA binding | chr4:8978060-8978623 FORWARD LENGTH=187 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • 60S ribosome subunit biogenesis protein NIP7 homolog OS=Arabidopsis thaliana GN=At4g15770 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 187 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: ribosome biogenesis [ISS]
    ribosome assembly [IEA]
    Molecular Function: RNA binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPLDETETT VVFEKLFKFV GNNLKKIVEN PSDEGPESTP GSYCFRLQKN RVYYVSEALV  60
   61 KRATNISRKN LVSFGTCIGK YTHAGSFHLT IMSLNILAAN AKHKVWLKPT SEMSFLYGNH 120
  121 VLKGGLGRIT DSIVPGDGVV VFSMSDVPLG FGIAAKSTQD CRKLDPNGIV VLHQADIGEY 180
  181 LRGEDDL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..187] PSI-BLAST 80.69897 Crystal Structure of Northeast Structural Genomics Consortium Target HR2118: A Human Homolog of Saccharomyces cerevisiae Nip7p


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle