YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|45752644, gi\|...
Organism:	Arabidopsis thaliana
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|45752644, gi|....

Description	E-value	Query Range	Subject Range
NIP7_PIG - 60S ribosome subunit biogenesis protein NIP7 homolog OS=Sus scrofa GN=NIP7 PE=2 SV=1	297.0	[0..1]	[187..1]
NIP7_XENLA - 60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis GN=nip7 PE=2 SV=1	297.0	[0..1]	[187..1]
gi\|76640106 - gi\|76640106\|ref\|XP_587055.2\| PREDICTED: similar to 60S ribosome subunit biogenesis protein NIP7 homo...	296.0	[0..1]	[187..1]
NIP7 - nuclear import 7 homolog (S. cerevisiae) NIP7_PONPY - 60S ribosome subunit biogenesis protein NIP7 homolog - Pongo pygmaeus (Orangutan) NIP7_PONAB - 60S ribosome subunit biogenesis protein NIP7 homolog OS=Pongo abelii GN=NIP7 PE=2 SV=1 gi\|123995231, gi... - gi\|123995231\|gb\|ABM85217.1\| nuclear import 7 homolog (S. cerevisiae) [synthetic construct], gi\|12398... ENSPTRT00000044085 - null gi\|90082984 - gi\|90082984\|dbj\|BAE90574.1\| unnamed protein product [Macaca fascicularis]	296.0	[0..1]	[187..1]
NIP7_TETNG - 60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon nigroviridis GN=nip7 PE=3 SV=1	294.0	[0..1]	[187..1]
NIP7_MOUSE - 60S ribosome subunit biogenesis protein NIP7 homolog OS=Mus musculus GN=Nip7 PE=1 SV=1	294.0	[0..1]	[187..1]
gi\|57087185 - gi\|57087185\|ref\|XP_536804.1\| PREDICTED: similar to 60S ribosome subunit biogenesis protein NIP7 homo...	294.0	[0..1]	[187..1]
NIP7_RAT - 60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus GN=Nip7 PE=2 SV=1	294.0	[0..1]	[187..1]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPLDETETT VVFEKLFKFV GNNLKKIVEN PSDEGPESTP GSYCFRLQKN RVYYVSEALV  60
   61 KRATNISRKN LVSFGTCIGK YTHAGSFHLT IMSLNILAAN AKHKVWLKPT SEMSFLYGNH 120
  121 VLKGGLGRIT DSIVPGDGVV VFSMSDVPLG FGIAAKSTQD CRKLDPNGIV VLHQADIGEY 180
  181 LRGEDDL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.69897
Match:	1t5yA
Description:	Crystal Structure of Northeast Structural Genomics Consortium Target HR2118: A Human Homolog of Saccharomyces cerevisiae Nip7p
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits