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Protein Overview: gi|30683419, gi|...

General Information:
Name(s) found: gi|30683419 [NCBI NR]
gi|110736770 [NCBI NR]
Description(s) found:
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  • gi|30683419|ref|NP_563931.2| ATE1; nucleic acid binding / nucleotide binding [Arabidopsis thaliana] [NCBI NR]
  • gi|110736770|dbj|BAF00346.1| AtE1 [Arabidopsis thaliana] [NCBI NR]
  • RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 RNA recognition motif (RRM)-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATE1 | ATE1 (ATPase E1); nucleic acid binding | chr1:4693377-4694176 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ATE1; nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AtE1 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179 FORWARD LENGTH=177 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • ATPase E1 OS=Arabidopsis thaliana GN=ATE1 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of Q9ZT48, ATPase E1 OS=Arabidopsis thaliana GN=ATE1 PE=1 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 177 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVQQQQAM QKNTLYVGGL ADEVNESILH AAFIPFGDIK DVKTPLDQAN QKHRSFGFVT  60
   61 FLEREDASAA MDNMDGAELY GRVLTVNYAL PEKIKGGEQG WAAHPLWADA DTWFERQQQE 120
  121 KEILKMQAEN KAAMETAEEL HRKKLAEDRQ GEMEEDTDTK NDPMARAEAD ALSHGDA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..92] PSI-BLAST 21.221849 Solution Structure of the RNA recognition motif in Peptidyl-prolyl cis-trans isomerase E
    2 View Details [93..177] MSA 1.410994 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.26550630643712 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.02897811404491 bayes_pls_golite062009
  • RNA binding
    		•  1.45577328897026 bayes_pls_golite062009
  • mRNA binding
    		•  0.274978159646657 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle