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Protein Overview: LA2_ARATH

General Information:
Name(s) found: LA2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|30699461|ref|NP_178106.2| La domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|111074414|gb|ABH04580.1| At1g79880 [Arabidopsis thaliana] [NCBI NR]
  • La protein 2 OS=Arabidopsis thaliana GN=LA2 PE=1 SV=1 [Swiss-Prot]
  • La domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 La domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | La domain-containing protein | chr1:30051115-30053229 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • At1g79880 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • RNA binding / nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | RNA recognition motif (RRM)-containing protein | chr1:30046222-30048336 REVERSE LENGTH=399 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At1g79880 OS=Arabidopsis thaliana GN=At1g79880 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 399 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    ribonucleoprotein complex [IEA]
    Biological Process: RNA processing [IEA]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSFNEETA KKLLTQVEFY FSDSNLPTDG FLNREVTKSK DGLVSLPLVC SFSRMRNLLG  60
   61 LGNINREDIP PRIVEEVANL LRTSDFLKVS NNGQRIGRGT KLSKPEEVLE QVHRRTLAAS 120
  121 PFEYSIKMED VSSFFSQYAK VNSVRLPPNI ADKRRFCGTA LVEFSSEQDT QDILRQSLVY 180
  181 AGADLVLIPK SDFDCQRENM IKQLGKSESH NEFRRGQIVK FALKWIASEE KVTNKEKPSA 240
  241 LKNKIKEKED KETGIADREK ENGDNSCASL CKDNTDQLVV PPWNNSNSVS SEVLKDLFQR 300
  301 FGSVEHIEYS GGLDSGYVWF TDSETAMKAR AAVEFVGGLV VKNNFSVALE AINGEMEREL 360
  361 WKRLSSAELE GGKEGHKKEK GKDECFENVQ PTKKARKEP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..214] PSI-BLAST 37.69897 Poly(A)-binding protein
    2 View Details [215..299] deduced N/A No confident structure predictions are available.
    3 View Details [300..399] PSI-BLAST 4.221849 Lupus LA protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle