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Protein Overview: PPR85_ARATH

General Information:
Name(s) found: PPR85_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g59720, mitochondrial; Flags: Precursor [NCBI NR]
  • gi|15218900|ref|NP_176180.1| CRR28 (CHLORORESPIRATORY REDUCTION28); endonuclease [Arabidopsis thaliana] [NCBI NR]
  • Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2 [Swiss-Prot]
  • pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Pentatricopeptide (PPR) repeat-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:21943533-21945449 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: CRR28 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:21939868-21941784 REVERSE LENGTH=638 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 638 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IDA]
    Biological Process: mRNA modification [IMP]
    Molecular Function: endonuclease activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVRSIIVSP PTTITYYHPM SIGLLVHPLS PHIPPASSPS ASTAGNHHQR IFSLAETCSD  60
   61 MSQLKQLHAF TLRTTYPEEP ATLFLYGKIL QLSSSFSDVN YAFRVFDSIE NHSSFMWNTL 120
  121 IRACAHDVSR KEEAFMLYRK MLERGESSPD KHTFPFVLKA CAYIFGFSEG KQVHCQIVKH 180
  181 GFGGDVYVNN GLIHLYGSCG CLDLARKVFD EMPERSLVSW NSMIDALVRF GEYDSALQLF 240
  241 REMQRSFEPD GYTMQSVLSA CAGLGSLSLG TWAHAFLLRK CDVDVAMDVL VKNSLIEMYC 300
  301 KCGSLRMAEQ VFQGMQKRDL ASWNAMILGF ATHGRAEEAM NFFDRMVDKR ENVRPNSVTF 360
  361 VGLLIACNHR GFVNKGRQYF DMMVRDYCIE PALEHYGCIV DLIARAGYIT EAIDMVMSMP 420
  421 MKPDAVIWRS LLDACCKKGA SVELSEEIAR NIIGTKEDNE SSNGNCSGAY VLLSRVYASA 480
  481 SRWNDVGIVR KLMSEHGIRK EPGCSSIEIN GISHEFFAGD TSHPQTKQIY QQLKVIDDRL 540
  541 RSIGYLPDRS QAPLVDATND GSKEYSLRLH SERLAIAFGL INLPPQTPIR IFKNLRVCND 600
  601 CHEVTKLISK VFNTEIIVRD RVRFHHFKDG SCSCLDYW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..390] PSI-BLAST 36.69897 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
    2 View Details [391..518] PSI-BLAST 4.0 Hop
    3 View Details [519..638] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.72

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle