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Protein Overview: NU98B_ARATH

General Information:
Name(s) found: NU98B_ARATH [Swiss-Prot]
Description(s) found:
Found 8 descriptions.
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  • Nuclear pore complex protein NUP98B OS=Arabidopsis thaliana GN=NUP98B PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 997 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGSSNNNPF GQSSISSPFG TQTHSLFGQT NNNASNNPFA TKPFGTSTPF GAQTGSSMFG  60
   61 GTSTGVFGAP QTSSPFGASP QAFGSSTQAF GASSTPSFGS SNSPFGGTST FGQKSFGLST 120
  121 PQSSPFGSTT QQSQPAFGNS TFGSSTPFGA STTPAFGASS TPAFGVSNTS GFGATNTPGF 180
  181 GATNTTGFGG SSTPGFGASS TPAFGSTNTP AFGASSTPLF GSSSSPAFGA SPAPAFGSSG 240
  241 NAFGNNTFSS GGAFGSSSTP TFGASNTSAF GASSSPSFNF GSSPAFGQST SAFGSSSFGS 300
  301 TQSSLGSTPS PFGAQGAQAS TSTFGGQSTI GGQQGGSRVI PYAPTTDTAS GTESKSERLQ 360
  361 SISAMPAHKG KNMEELRWED YQRGDKGGQR STGQSPEGAG FGVTNSQPSI FSTSPAFSQT 420
  421 PVNPTNPFSQ TTPTSNTNFS PSFSQPTTPS FGQPTTPSFR STVSNTTSVF GSSSSLTTNT 480
  481 SQPLGSSIFG STPAHGSTPG FSIGGFNNSQ SSPLFGSNPS FAQNTTPAFS QTSPLFGQNT 540
  541 TPALGQSSSV FGQNTNPALV QSNTFSTPST GFGNTFSSSS SLTTSISPFG QITPAVTPFQ 600
  601 SAQPTQPLGA FGFNNFGQTQ IANTTDIAGA MGTFSQGNFK QQPALGNSAV MQPTPVTNPF 660
  661 GTLPALPQIS IAQGGNSPSI QYGISSMPVV DKPAPVRVSP LLTSRHLLQR RVRLPTRKYR 720
  721 PSDDGPKVPF FSDEEENSST PKADAFFIPR ENPRALFIRP VERVKSEHPK DSPTPLQENG 780
  781 KRSNGVTNGA NHETKDNGAI REAPPVKVNQ KQNGTHENHG GDKNGSHSSP SGADIESLMP 840
  841 KLHHSEYFTE PRIQELAAKE RVEQGYCKRV KDFVVGRHGY GSIKFLGETD VCRLDLEMVV 900
  901 QFKNREVNVY MDESKKPPVG QGLNKPAVVT LLNIKCMDKK TGTQVMEGER LDKYKEMLKR 960
  961 KAGEQGAQFV SYDPVNGEWT FKVEHFSSYK LGDEYDV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..894] PSI-BLAST 34.30103 No description for 1y0fB was found.
    2 View Details [895..997] PSI-BLAST 52.30103 C-terminal autoproteolytic domain of nucleoporin nup98


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle