YRC Public Data Repository - Protein Structure Prediction

Protein:	NU98B_ARATH
Organism:	Arabidopsis thaliana
Length:	997 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NU98B_ARATH.

Description	E-value	Query Range	Subject Range
gi\|114635697 - gi\|114635697\|ref\|XP_001158551.1\| PREDICTED: nucleoporin 98kD isoform 5 [Pan troglodytes]	268.0	[0..200]	[996..25]
gi\|50796188 - gi\|50796188\|ref\|XP_428171.1\| PREDICTED: similar to nucleoporin 98kD isoform 1; Nup98-Nup96 precursor...	264.0	[0..178]	[996..5]
gi\|18032249 - gi\|18032249\|gb\|AAL56659.1\|AF231130_1 NUP196 nucleoporin [Homo sapiens]	263.0	[0..163]	[996..26]
gi\|73988047 - gi\|73988047\|ref\|XP_861730.1\| PREDICTED: similar to nucleoporin 98kD isoform 1 isoform 2 [Canis famil...	261.0	[0..163]	[996..26]
gi\|157167277, gi... - gi\|157167277\|ref\|XP_001658483.1\| nuclear pore complex protein nup98 [Aedes aegypti], gi\|108876474\|gb...	256.0	[0..2]	[996..9]

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Predicted Domain #1

Region A:
Residues: [1-894]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGSSNNNPF GQSSISSPFG TQTHSLFGQT NNNASNNPFA TKPFGTSTPF GAQTGSSMFG  60
   61 GTSTGVFGAP QTSSPFGASP QAFGSSTQAF GASSTPSFGS SNSPFGGTST FGQKSFGLST 120
  121 PQSSPFGSTT QQSQPAFGNS TFGSSTPFGA STTPAFGASS TPAFGVSNTS GFGATNTPGF 180
  181 GATNTTGFGG SSTPGFGASS TPAFGSTNTP AFGASSTPLF GSSSSPAFGA SPAPAFGSSG 240
  241 NAFGNNTFSS GGAFGSSSTP TFGASNTSAF GASSSPSFNF GSSPAFGQST SAFGSSSFGS 300
  301 TQSSLGSTPS PFGAQGAQAS TSTFGGQSTI GGQQGGSRVI PYAPTTDTAS GTESKSERLQ 360
  361 SISAMPAHKG KNMEELRWED YQRGDKGGQR STGQSPEGAG FGVTNSQPSI FSTSPAFSQT 420
  421 PVNPTNPFSQ TTPTSNTNFS PSFSQPTTPS FGQPTTPSFR STVSNTTSVF GSSSSLTTNT 480
  481 SQPLGSSIFG STPAHGSTPG FSIGGFNNSQ SSPLFGSNPS FAQNTTPAFS QTSPLFGQNT 540
  541 TPALGQSSSV FGQNTNPALV QSNTFSTPST GFGNTFSSSS SLTTSISPFG QITPAVTPFQ 600
  601 SAQPTQPLGA FGFNNFGQTQ IANTTDIAGA MGTFSQGNFK QQPALGNSAV MQPTPVTNPF 660
  661 GTLPALPQIS IAQGGNSPSI QYGISSMPVV DKPAPVRVSP LLTSRHLLQR RVRLPTRKYR 720
  721 PSDDGPKVPF FSDEEENSST PKADAFFIPR ENPRALFIRP VERVKSEHPK DSPTPLQENG 780
  781 KRSNGVTNGA NHETKDNGAI REAPPVKVNQ KQNGTHENHG GDKNGSHSSP SGADIESLMP 840
  841 KLHHSEYFTE PRIQELAAKE RVEQGYCKRV KDFVVGRHGY GSIKFLGETD VCRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.30103
Match:	1y0fB
Description:	No description for 1y0fB was found.

Predicted Domain #2

Region A:
Residues: [895-997]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLEMVVQFKN REVNVYMDES KKPPVGQGLN KPAVVTLLNI KCMDKKTGTQ VMEGERLDKY  60
   61 KEMLKRKAGE QGAQFVSYDP VNGEWTFKVE HFSSYKLGDE YDV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.30103
Match:	1ko6A
Description:	C-terminal autoproteolytic domain of nucleoporin nup98
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits