YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: DCP1_ARATH

General Information:
Name(s) found: DCP1_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|67460429|sp|Q9SJF3.2|DCP1_ARATH RecName: Full=mRNA-decapping enzyme-like protein; AltName: Full=DCP1 homolog [NCBI NR]
  • gi|18390886|ref|NP_563814.1| DCP1 (decapping 1); m7G(5')pppN diphosphatase/ protein homodimerization [Arabidopsis thaliana] [NCBI NR]
  • mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370 PE=1 SV=2 [Swiss-Prot]
  • hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 mRNA decapping enzyme-like protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: DCP1 | DCP1 (DECAPPING 1); m7G(5')pppN diphosphatase/ protein homodimerization | chr1:2638352-2640364 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • mRNA decapping enzyme-like protein (DCP1 homolog) [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: DCP1, ATDCP1 | decapping 1 | chr1:2638355-2640367 FORWARD LENGTH=367 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 367 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDA]
    cytoplasmic mRNA processing body [IDA][NAS]
    Biological Process: deadenylation-independent decapping of nuclear-transcribed mRNA [IDA]
    Molecular Function: protein homodimerization activity [IPI]
    [NOT]m7G(5')pppN diphosphatase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQNGKIIPN LDQNSTRLLN LTVLQRIDPY IEEILITAAH VTFYEFNIEL SQWSRKDVEG  60
   61 SLFVVKRSTQ PRFQFIVMNR RNTDNLVENL LGDFEYEVQG PYLLYRNASQ EVNGIWFYNK 120
  121 RECEEVATLF NRILSAYSKV NQKPKASSSK SEFEELEAKP TMAVMDGPLE PSSTARDAPD 180
  181 DPAFVNFFSS TMNLGNTASG SASGPYQSSA IPHQPHQPHQ PTIAPPVAAA APPQIQSPPP 240
  241 LQSSSPLMTL FDNNPEVISS NSNIHTDLVT PSFFGPPRMM AQPHLIPGVS MPTAPPLNPN 300
  301 NASHQQRSYG TPVLQPFPPP TPPPSLAPAP TGPVISRDKV KEALLSLLQE DEFIDKITRT 360
  361 LQNALQQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..82] PSI-BLAST 6.39794 Crystal structure of Dcp1p
    2 View Details [83..138] FFAS03 2.48 Crystal structure of Dcp1p
    3 View Details [139..367] MSA 25.183997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle