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Protein Overview: VSR6_ARATH

General Information:
Name(s) found: VSR6_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|15221538|ref|NP_174375.1| vacuolar sorting receptor, putative [Arabidopsis thaliana] [NCBI NR]
  • Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2 SV=3 [Swiss-Prot]
  • vacuolar sorting receptor, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Vacuolar sorting receptor [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | vacuolar sorting receptor, putative | chr1:10997256-11000524 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • calcium ion binding / peptidase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: VSR6, VSR3;3, BP80-3;3 | VACUOLAR SORTING RECEPTOR 6 | chr1:10997275-11000543 FORWARD LENGTH=631 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 631 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLIHKGATL ALFLALTMVV NGVFGRFIVE KSSVTILNPL AMRSKHDAAI ANFGVPNYGG  60
   61 YMIGSVVYAG QGAYGCDSFD KTFKPKFPRP TILIIDRGEC YFALKVWNGQ QSGVAAVLVA 120
  121 DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES 180
  181 LPHPDERVEY ELWTNTNDEC GARCDEQMNF VKNFKGHAQI LEKGGYSLFT PHYITWFCPK 240
  241 DYVSSNQCKS QCINQGRYCA PDPEQDFGDG YDGKDIVFEN LRQLCVHKVA KENNRSWVWW 300
  301 DYVTDFHIRC SMKEKKYSKE CAERVVESLG LPLDKIKKCI GDPDANVENE VLKAEQALQV 360
  361 GQGDRGDVTI LPTLIVNNAQ YRGKLERNAV LKAICSGFKE RTEPGICLSG DIETNECLEA 420
  421 NGGCWEDKKS NVTACKDTFR GRVCECPVVN GVQYKGDGYT SCEPYGPARC SINQGGCWSE 480
  481 TKKGLTFSAC SNLETSGCRC PPGFKGDGLK CEDIDECKEQ SACQCDGCNC KNKWGGFECK 540
  541 CSGNRLYMKE QDTCIERSGS RIGWFPTFVI LAAVASICVG GYVFYKYRLR SYMDSEIMAI 600
  601 MSQYMPLESQ NTTDPMTGES QHQQLRLTSA A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..201] FFAS03 2.01 Transferrin receptor ectodomain, C-terminal domain; Transferrin receptor ectodomain, apical domain; Transferrin receptor ectodomain, protease-like domain
    2 View Details [202..631] PSI-BLAST 33.09691 Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.286076792172079 bayes_pls_golite062009
  • protein binding
    		•  0.14494900666454 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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