| Protein: | VSR6_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 631 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VSR6_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
423.0 | [0..1] | [631..1] |
|
Region A: Residues: [1-201] |
1 11 21 31 41 51
| | | | | |
1 MSLIHKGATL ALFLALTMVV NGVFGRFIVE KSSVTILNPL AMRSKHDAAI ANFGVPNYGG 60
61 YMIGSVVYAG QGAYGCDSFD KTFKPKFPRP TILIIDRGEC YFALKVWNGQ QSGVAAVLVA 120
121 DNVDEPLITM DSPEESKEAD DFIEKLNIPS ALIDFSFANT LKQALKKGEE VVLKIDWSES 180
181 LPHPDERVEY ELWTNTNDEC G
|
| Detection Method: |  |
| Confidence: | 2.01 |
| Match: | 1de4C |
| Description: | Transferrin receptor ectodomain, C-terminal domain; Transferrin receptor ectodomain, apical domain; Transferrin receptor ectodomain, protease-like domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [202-631] |
1 11 21 31 41 51
| | | | | |
1 ARCDEQMNFV KNFKGHAQIL EKGGYSLFTP HYITWFCPKD YVSSNQCKSQ CINQGRYCAP 60
61 DPEQDFGDGY DGKDIVFENL RQLCVHKVAK ENNRSWVWWD YVTDFHIRCS MKEKKYSKEC 120
121 AERVVESLGL PLDKIKKCIG DPDANVENEV LKAEQALQVG QGDRGDVTIL PTLIVNNAQY 180
181 RGKLERNAVL KAICSGFKER TEPGICLSGD IETNECLEAN GGCWEDKKSN VTACKDTFRG 240
241 RVCECPVVNG VQYKGDGYTS CEPYGPARCS INQGGCWSET KKGLTFSACS NLETSGCRCP 300
301 PGFKGDGLKC EDIDECKEQS ACQCDGCNCK NKWGGFECKC SGNRLYMKEQ DTCIERSGSR 360
361 IGWFPTFVIL AAVASICVGG YVFYKYRLRS YMDSEIMAIM SQYMPLESQN TTDPMTGESQ 420
421 HQQLRLTSAA
|
| Detection Method: | |
| Confidence: | 33.09691 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.286076792172079 | bayes_pls_golite062009 |
| protein binding | 0.14494900666454 | bayes_pls_golite062009 |
