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Protein Overview: gi|42571593

General Information:
Name(s) found: gi|42571593 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|42571593|ref|NP_973887.1| tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 603 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLSSLPINT LINLPKSLFL ISPFRFRNLN RSLTVASRIS STLLRVSGVS SRPCGYWFST  60
   61 NAAMTNVGEE DKQSIPSIEL KENIELTDKE RKIFDRLLST LRYCNLDTQL RVAGGWVRDK 120
  121 LLGKESDDID IAIDNMSGSE FLDKFKEYLS SRDEEVQGDT VIERNPDQSK HLETAKLRIY 180
  181 DQWIDFVNLR SEEYTENSRI PTMKFGTAKD DAFRRDLTIN SLFYNINSGA VEDLTERGID 240
  241 DLKSGKIVTP LPAKATFLDD PLRVLRAVRF GARFGFTLDE ELKEAASSEE VRVALGEKIS 300
  301 RERIGNEIDL MISGNGPVSA VTYLSDLKLF SVVFALPSSA EPSPPENCGS LSQSYLEAMW 360
  361 SLLKTPRPGK FSGEQRRLAL YAAMFLPFRK TVYKDTKGKS IPVVNHIFKF SMKRKTSDAE 420
  421 TVMNIHQTTE RFRSLIPSLE VKKDVELDEL TWAADILEHW KSITLNDPVI PATSKIRVLT 480
  481 GFLLRDIKDF WRVSLLTSLL LSATVDGSND HQDIGQLDFQ LERMRETYLT VEATIHELGL 540
  541 DKIWDAKPLV NGREIMQIAE LKGGSRLIRE WKLLTWQLAY PNGTAEECKE WMRDIKAKRQ 600
  601 RIE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..76] MSA 6.068997 View MSA. No confident structure predictions are available.
    2 View Details [77..512] PSI-BLAST 68.30103 tRNA CCA-adding enzyme, C-terminal domains; tRNA CCA-adding enzyme, head domain
    3 View Details [513..603] FFAS03 1.19 tRNA CCA-adding enzyme, C-terminal domains; tRNA CCA-adding enzyme, head domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transferase activity, transferring phosphorus-containing groups
    		•  2.63905617158862 bayes_pls_golite062009
  • transferase activity
    		•  2.28535908015265 bayes_pls_golite062009
  • tRNA binding
    		•  1.96218336722441 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  1.28424599869932 bayes_pls_golite062009
  • RNA binding
    		•  1.26469116227089 bayes_pls_golite062009
  • catalytic activity
    		•  0.75232920999699 bayes_pls_golite062009
  • polynucleotide adenylyltransferase activity
    		•  0.747086661208511 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.56250895409788 bayes_pls_golite062009
  • binding
    		•  0.248197954076327 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.69

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle