YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|209529769, gi...

General Information:
Name(s) found: gi|42562111 [NCBI NR]
gi|209529769 [NCBI NR]
Description(s) found:
Found 9 descriptions.
SHOW ALL
  • gi|42562111|ref|NP_173147.2| SHA (SH2 DOMAIN PROTEIN A); protein binding / signal transducer/ transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|209529769|gb|ACI49779.1| At1g17040 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 641 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: signal transduction [IEA]
    regulation of transcription, DNA-dependent [IEA]
    Molecular Function: transcription factor activity [IEA]
    protein binding [IEA]
    signal transducer activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGDCAIDTE KYSLLEDFNV DVEVENKAFE TFSLCFWVYL LDSTTYPSAI IRQVHSDMSV  60
   61 SAPFLVLDEN KKMMLLPLTL LHREAPDPVN TSSWTEVPNV STTAKFPLQK WVHVGCEVSR 120
  121 NYMRLYICGE LVGEQVLTSL MTNGTNSDCA RKISLFSVGG DGYSVQGFIH SAEVLPSNLS 180
  181 ASYHYTKDPP LWLSVDKPST SGIELDEDGV WSVVSGTFCS LDVVLTNAIG QPVHKDVKVV 240
  241 ASLLYADSGT HVEKRSDFEA FLLVSYEGIE LSAEDKPCNL LNGCASFKFK LSQLSSKSDK 300
  301 RLFCIKFEIP EVKANYPFLE TVTNQIRCIS RNRDSVSSMK RIRLGEEKVS ESKIVNGNGT 360
  361 SMEWRPQNHE EDNSSTDSEN TEMRDSTAFR RYSIPDWIIF KYCLGNLTER ALLLKEITNN 420
  421 SSDEEVSEFA DQVSLYSGCS HHGYQIKMAR KLIAEGTNAW NLISRNYRHV HWDNVVIEIE 480
  481 EHFMRIAKCS SRSLTHQDFD LLRRICGCYE YITQENFETM WCWLFPVASA VSRGLINGMW 540
  541 RSASPKWIEG FVTKEEAERS LQNQVPGTFI LRFPTSRSWP HPDAGSVVVT YVGHDLVIHH 600
  601 RLLTINHICD SSERYTDAKQ LQDMLLAEPE LSRLGRIIRG I

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..196] FFAS03 1.15 No description for 2uurA was found.
    2 View Details [197..356] deduced N/A No confident structure predictions are available.
    3 View Details [357..641] PSI-BLAST 98.69897 STAT3b

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  1.13591399970354 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.54158309583174 bayes_pls_golite062009
  • DNA binding
    		•  0.53363287856737 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.3602964037518 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle