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Protein Overview: gi|22329579

General Information:
Name(s) found: gi|22329579 [NCBI NR]
Description(s) found:
Found 5 descriptions.
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  • gi|22329579|ref|NP_683308.1| U-box domain-containing protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 295 amino acids

    Gene Ontology:
    Cellular Component: ubiquitin ligase complex [IEA]
    endomembrane system [IEA]
    Biological Process: protein ubiquitination [IEA]
    Molecular Function: ubiquitin-protein ligase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSPPALILL VNYARVYNLC RLFLSVFRTE LFFSNAVNLE ICVAATVLTP LTPLLGLYFG  60
   61 SQAHWQLNLF GEHIKGFVGI IFCPSPKVAE NDLAATKMVK PEERMVPELL PLIHFSVDCR 120
  121 KSSVEGVIGN LLGDSHHWGC YTVEIEKPKY ACMKSLRRME DIVPRSNSVL VIGRHALKKL 180
  181 IDWESVEEDK GKDSIVAYIL HLMKKYSKLF RRQIFIPPEE QISLQLMRDP VIVASGQTYE 240
  241 RVCVEKWFCD GKLLPQYSEA APTSFPDSQL LCYKSDCELV SAEWDHCIIF CPKYF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..295] PSI-BLAST 26.0 Crystal structure of the CHIP U-box E3 ubiquitin ligase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0938889867773109 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.45

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle