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Protein Overview: STIL1_ARATH

General Information:
Name(s) found: STIL1_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|30683811|ref|NP_172898.2| DNA polymerase-related [Arabidopsis thaliana] [NCBI NR]
  • Protein STICHEL-like 1 OS=Arabidopsis thaliana GN=At1g14460 PE=1 SV=1 [Swiss-Prot]
  • DNA polymerase-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 DNA polymerase-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | DNA polymerase-related | chr1:4948957-4952745 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | AAA-type ATPase family protein | chr1:4948962-4952750 REVERSE LENGTH=1116 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • AAA-type ATPase family protein OS=Arabidopsis thaliana GN=At1g14460 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1116 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLRISDPS KLHLKKELTH IRKVASKGLR DPGTTSSWKS PLTSSRFVVE PPASNNVEIL  60
   61 SNNQLDSQFP SSRVFGNNGK EKEKKVFLYN WKTQRTSSEK TEGEDETSWI QASLNDDDDD 120
  121 DDDVSDARNG GDSCLEETRS ASMIRKSGFI KKKSKELDLS IGRKSTAKAR NFPSHHLHVA 180
  181 SGLSVVRDES DETEDFSNSE NFPTKVSSPL LLKLKRKNWS RSSSKFLRGT SKREDSSHTC 240
  241 NSTPALSTSS YNMYGIRNPS TVGSWEDGDD ELDDDNLDFK GRQGCGIPFY WTKRNLKHRG 300
  301 GCRSCCSPSF SDTLRRKGSS ILCGSQSVYR RHRHSSGRFN KQKLALRSAK GVLPLLKYGG 360
  361 DSRGGSSIGI GYSDDDLSTD FGEIDLEAQS RLDGRRWSSC CKSQDGEREE EEEGGSTPES 420
  421 IQSLSQKYKP MFFDELIGQS IVVQSLMNAV KKGRVAHVYL FQGPRGTGKT STARILSAAL 480
  481 NCDVVTEEMK PCGYCKECSD YMLGKSRDLL ELDAGKKNGA EKVRYLLKKL LTLAPQSSQR 540
  541 YKVFVIDECH LLPSRTWLSL LKFLENPLQK FVFVCITTDL DNVPRTIQSR CQKYIFNKVR 600
  601 DGDIVVRLRK IASDENLDVE SQALDLIALN ADGSLRDAET MLEQLSLMGK RITVDLVNEL 660
  661 VGVVSDDKLL ELLELALSSD TAETVKKARE LLDLGADPIL MMSQLASLIM DIIAGAYKAL 720
  721 DEKYSEAFLD RRNLTEADLE RLKHALKLLS EAEKQLRVST DRSTWFIATL LQLGSMPSPG 780
  781 TTHTGSSRRQ SSRATEESIS REVIAYKQRS GLQCSNTASP TSIRKSGNLV REVKLSSSSS 840
  841 EVLESDTSMA SHDDTTASTM TLTCRNSEKL NDIWIKCVDR CHSKTLKQLL YAHGKLLSIS 900
  901 EVEGILVAYI AFGEGEIKAR AERFVSSITN SIEMVLRRNV EVRIILLSET ELLNSKQTRQ 960
  961 IAVTTSSYTE SGNEIPMKRI EAIIQEQRLE TEWLQKTPGS QGRLKPERNQ ILPQEDTNGV1020
 1021 KVLKICEMGE FQENQSGKRM EHCPVSPSLL HNSNFTNNKD NLGYESESGR GVCSLLFCWN1080
 1081 TQKSPRRTKI KGTSMRSRRS RERRFSLFSA CARPRK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..116] deduced N/A No confident structure predictions are available.
    2 View Details [117..292] PSI-BLAST 42.154902 ClpB
    3 View Details [293..418] deduced N/A No confident structure predictions are available.
    4 View Details [419..679] PSI-BLAST 57.0 delta prime subunit of DNA polymerase III, N-domain
    5 View Details [680..857] PSI-BLAST 68.0 ADP Bound E. coli Clamp Loader Complex
    6 View Details [858..995] deduced N/A No confident structure predictions are available.
    7 View Details [996..1116] PSI-BLAST 9.69897 No description for 2ayaA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle