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View Structure Prediction Details

Protein: STIL1_ARATH
Organism: Arabidopsis thaliana
Length: 1116 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for STIL1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLRISDPS KLHLKKELTH IRKVASKGLR DPGTTSSWKS PLTSSRFVVE PPASNNVEIL  60
   61 SNNQLDSQFP SSRVFGNNGK EKEKKVFLYN WKTQRTSSEK TEGEDETSWI QASLND

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [117-292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDDDDDDVSD ARNGGDSCLE ETRSASMIRK SGFIKKKSKE LDLSIGRKST AKARNFPSHH  60
   61 LHVASGLSVV RDESDETEDF SNSENFPTKV SSPLLLKLKR KNWSRSSSKF LRGTSKREDS 120
  121 SHTCNSTPAL STSSYNMYGI RNPSTVGSWE DGDDELDDDN LDFKGRQGCG IPFYWT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.154902
Match: 1jbkA
Description: ClpB
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [293-418]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRNLKHRGGC RSCCSPSFSD TLRRKGSSIL CGSQSVYRRH RHSSGRFNKQ KLALRSAKGV  60
   61 LPLLKYGGDS RGGSSIGIGY SDDDLSTDFG EIDLEAQSRL DGRRWSSCCK SQDGEREEEE 120
  121 EGGSTP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [419-679]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESIQSLSQKY KPMFFDELIG QSIVVQSLMN AVKKGRVAHV YLFQGPRGTG KTSTARILSA  60
   61 ALNCDVVTEE MKPCGYCKEC SDYMLGKSRD LLELDAGKKN GAEKVRYLLK KLLTLAPQSS 120
  121 QRYKVFVIDE CHLLPSRTWL SLLKFLENPL QKFVFVCITT DLDNVPRTIQ SRCQKYIFNK 180
  181 VRDGDIVVRL RKIASDENLD VESQALDLIA LNADGSLRDA ETMLEQLSLM GKRITVDLVN 240
  241 ELVGVVSDDK LLELLELALS S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.0
Match: 1njfA
Description: delta prime subunit of DNA polymerase III, N-domain
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [680-857]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTAETVKKAR ELLDLGADPI LMMSQLASLI MDIIAGAYKA LDEKYSEAFL DRRNLTEADL  60
   61 ERLKHALKLL SEAEKQLRVS TDRSTWFIAT LLQLGSMPSP GTTHTGSSRR QSSRATEESI 120
  121 SREVIAYKQR SGLQCSNTAS PTSIRKSGNL VREVKLSSSS SEVLESDTSM ASHDDTTA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.0
Match: 1xxiB
Description: ADP Bound E. coli Clamp Loader Complex
Matching Structure (courtesy of the PDB):

Predicted Domain #6
Region A:
Residues: [858-995]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STMTLTCRNS EKLNDIWIKC VDRCHSKTLK QLLYAHGKLL SISEVEGILV AYIAFGEGEI  60
   61 KARAERFVSS ITNSIEMVLR RNVEVRIILL SETELLNSKQ TRQIAVTTSS YTESGNEIPM 120
  121 KRIEAIIQEQ RLETEWLQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [996-1116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTPGSQGRLK PERNQILPQE DTNGVKVLKI CEMGEFQENQ SGKRMEHCPV SPSLLHNSNF  60
   61 TNNKDNLGYE SESGRGVCSL LFCWNTQKSP RRTKIKGTSM RSRRSRERRF SLFSACARPR 120
  121 K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.69897
Match: 2ayaA
Description: No description for 2ayaA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle