Protein Overview: gi|30680512

General Information:
Name(s) found:	gi\|30680512 [NCBI NR]
Description(s) found: SHOW ONLY BEST	gi\|30680512\|ref\|NP_850764.1\| BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)); nucleic acid binding [Arabidopsis thaliana] [NCBI NR] KH domain-containing protein NOVA, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas] Tax_Id=3702 KH domain-containing protein NOVA [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta] \| Symbols: \| KH domain-containing protein NOVA, putative \| chr5:1250603-1253524 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta] nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta] \| Symbols: BTR1, BTR1L \| binding to TOMV RNA 1L (long form) \| chr5:1250602-1253523 REVERSE LENGTH=334 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta] Binding to TOMV RNA 1L (Long form) protein OS=Arabidopsis thaliana GN=BTR1L PE=2 SV=1 [ARATH-contam.fasta] Isoform of Q9LZ82, Isoform BTR1L of Protein BTR1 OS=Arabidopsis thaliana GN=BTR1 [ARATH.fasta.20160308]
Organism:	Arabidopsis thaliana
Length:	334 amino acids
Gene Ontology:
Cellular Component:	cellular_component [ND]
Biological Process:	RNA splicing [NAS]
Molecular Function:	nucleic acid binding [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESTESYAAG SPEELAKRSP EPHDSSEADS AEKPTHIRFL VSNAAAGSVI GKGGSTITEF  60
   61 QAKSGARIQL SRNQEFFPGT TDRIIMISGS IKEVVNGLEL ILDKLHSELH AEDGNEVEPR 120
  121 RRIRLVVPNS SCGGIIGKGG ATIKSFIEES KAGIKISPLD NTFYGLSDRL VTLSGTFEEQ 180
  181 MRAIDLILAK LTEDDHYSQN VHSPYSYAGL FYSGFHGPPY AYALPSVATA GYNSVNYAPN 240
  241 GSGGKYQNHK EEASTTVTIG VADEHIGLVL GRGGRNIMEI TQMTGARIKI SDRGDFMSGT 300
  301 TDRKVSITGP QRAIQQAETM IKQKVDSATE RTTD

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

No functions predicted.

Term	Confidence	Notes
RNA binding	5.18414740305744	bayes_pls_golite062009
mRNA binding	3.82977088614136	bayes_pls_golite062009
nucleic acid binding	3.68444148122352	bayes_pls_golite062009
binding	2.8667878224392	bayes_pls_golite062009
transcription regulator activity	1.43703138180882	bayes_pls_golite062009
DNA binding	1.20852534725468	bayes_pls_golite062009
	1.02980840568405	bayes_pls_golite062009
poly-pyrimidine tract binding	0.63404501189528	bayes_pls_golite062009
mRNA 3'-UTR binding	0.489176583045793	bayes_pls_golite062009
protein binding	0.468975312217329	bayes_pls_golite062009
transcription factor activity	0.386248501195543	bayes_pls_golite062009
catalytic activity	0.113112541746059	bayes_pls_golite062009

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.97

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..111]	PSI-BLAST	25.30103	No description for 2annA was found.
2	View Details	[112..334]	PSI-BLAST	22.0	Far upstream binding element, FBP, KH3 and KH4 domains

Protein Overview: gi|30680512

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: