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Protein Overview: gi|30680512

General Information:
Name(s) found: gi|30680512 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|30680512|ref|NP_850764.1| BTR1L (BINDING TO TOMV RNA 1L (LONG FORM)); nucleic acid binding [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 334 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: RNA splicing [NAS]
    Molecular Function: nucleic acid binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESTESYAAG SPEELAKRSP EPHDSSEADS AEKPTHIRFL VSNAAAGSVI GKGGSTITEF  60
   61 QAKSGARIQL SRNQEFFPGT TDRIIMISGS IKEVVNGLEL ILDKLHSELH AEDGNEVEPR 120
  121 RRIRLVVPNS SCGGIIGKGG ATIKSFIEES KAGIKISPLD NTFYGLSDRL VTLSGTFEEQ 180
  181 MRAIDLILAK LTEDDHYSQN VHSPYSYAGL FYSGFHGPPY AYALPSVATA GYNSVNYAPN 240
  241 GSGGKYQNHK EEASTTVTIG VADEHIGLVL GRGGRNIMEI TQMTGARIKI SDRGDFMSGT 300
  301 TDRKVSITGP QRAIQQAETM IKQKVDSATE RTTD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..111] PSI-BLAST 25.30103 No description for 2annA was found.
    2 View Details [112..334] PSI-BLAST 22.0 Far upstream binding element, FBP, KH3 and KH4 domains

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA binding
    		•  5.18414740305744 bayes_pls_golite062009
  • mRNA binding
    		•  3.82977088614136 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.68444148122352 bayes_pls_golite062009
  • binding
    		•  2.8667878224392 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.43703138180882 bayes_pls_golite062009
  • DNA binding
    		•  1.20852534725468 bayes_pls_golite062009
    		• 1.02980840568405 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  0.63404501189528 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.489176583045793 bayes_pls_golite062009
  • protein binding
    		•  0.468975312217329 bayes_pls_golite062009
  • transcription factor activity
    		•  0.386248501195543 bayes_pls_golite062009
  • catalytic activity
    		•  0.113112541746059 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle