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Protein Overview: UBP23_ARATH

General Information:
Name(s) found: UBP23_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|18424054|ref|NP_568873.1| UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23); ubiquitin thiolesterase/ ubiquitin-specific protease [Arabidopsis thaliana] [NCBI NR]
  • gi|166201350|sp|Q9FPS4.2|UBP23_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 23; AltName: Full=Ubiquitin thioesterase 23; AltName: Full=Ubiquitin-specific-processing protease 23; AltName: Full=Deubiquitinating enzyme 23; Short=AtUBP23 [NCBI NR]
  • Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana GN=UBP23 PE=2 SV=2 [Swiss-Prot]
  • ubiquitin-specific protease 23, putative (UBP23) [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Ubiquitin-specific protease 23 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: UBP23 | UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23); ubiquitin-specific protease | chr5:23487444-23491223 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23); cysteine-type endopeptidase/ ubiquitin thiolesterase/ ubiquitin-specific protease [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: UBP23 | ubiquitin-specific protease 23 | chr5:23470218-23473997 REVERSE LENGTH=859 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 859 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: ubiquitin-dependent protein catabolic process [IEA]
    Molecular Function: ubiquitin-specific protease activity [ISS]
    ubiquitin thiolesterase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVATSSTEI TIQTDRDPSS NNNGSCAVAS STASAVFRKI EFHPARKPFN GFSNGRSDFK  60
   61 IETLNPCSSN QRLLSAPSAK KPDSSDLLEH GFEPDLTFSI TFRKIGAGLQ NLGNTCFLNS 120
  121 VLQCLTYTEP LAATLQTAAH QKYCHVAGFC ALCAIQKHVR TARQANGRIL APKDLVSNLR 180
  181 CISRNFRNCR QEDAHEYMIN LLECMHKCSL PSGVPSESSD AYRRSLVHKI FGGSLRSQVK 240
  241 CEQCSHCSNK FDPFLDLSLD ISKADSLQRA LSRFTAVELL DNGAKVYQCE RCKQKVKAKK 300
  301 QLTVSKAPYV LTVHLKRFEA HRSEKIDRKV DFTSAIDMKP FVSGPHEGNL KYTLYGVLVH 360
  361 YGRSSHSGHY ACFVRTSSGM WYSLDDNRVV QVSEKTVFNQ KAYMLFYVRD RQNAVPKNSV 420
  421 PVVKKESFAT NRASLIVASN IKDQVNGSTV IKECGFGALV ANGLAPLKSC GPSTPAVLTQ 480
  481 KDLNAKETQN NAISNVEAKE ILETENGSAP VKTCDLAAPT VLVQKDLNTK EIFQKEVPLP 540
  541 QANGEGSLVK EDSKAACLIL PEKVSPHLDG SANAQTLVKL PTLGPKAENS VEEKNSLNNL 600
  601 NEPANSLKVI NVSVGNPPVE KAVLIDQTMG HHLEESATSI ESLKLTSERE TLTTPKKTRK 660
  661 PKTKTLKVEF KFFKLALGLR KKKVQRRERL STTVAGEIIS EELLSKKRVK YQDTSLIAPS 720
  721 KMISSSDGAV TSDQQQPVGS SDLSEASQNA KRKRESVLLQ KEAVNILTRG VPETVVAKWD 780
  781 EEISASQKRG SKSEGASSIG YVADEWDEEY DRGKKKKIRI KEESYRGPNP FQMLASKRQK 840
  841 ETKKKWTQSI TDAKTAYRI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..413] PSI-BLAST 85.045757 No description for 2gfoA was found.
    2 View Details [414..614] deduced N/A No confident structure predictions are available.
    3 View Details [615..738] MSA 7.217995 View MSA. No confident structure predictions are available.
    4 View Details [739..859] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle