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Protein Overview: gi|42573674, gi|...

General Information:
Name(s) found: gi|42573674 [NCBI NR]
gi|124301146 [NCBI NR]
Description(s) found:
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  • gi|42573674|ref|NP_974933.1| SGP1; GTP binding [Arabidopsis thaliana] [NCBI NR]
  • gi|124301146|gb|ABN04825.1| At5g54840 [Arabidopsis thaliana] [NCBI NR]
  • GTP-binding family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 GTP-binding family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | GTP-binding family protein | chr5:22294587-22295554 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • GTP binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: SGP1 | Ras-related small GTP-binding family protein | chr5:22277361-22278328 REVERSE LENGTH=215 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At5g54840 OS=Arabidopsis thaliana GN=SGP1 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of Q9SUJ6, At5g54840 OS=Arabidopsis thaliana GN=SGP1 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 215 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: small GTPase mediated signal transduction [IEA]
    Molecular Function: GTP binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKVHEIAG KITPFCRKIV HVNRKWRIIE RVSIFGDFFR FLWRKIVSCS SIIEKPILYR  60
   61 RIVHKISSTA GDIFDGDDDT TTEPTVSGRR FGSSSDSDLV SLKISLLGDC QTGKTTFVVK 120
  121 YVGDENQSFL EMTGLNLMDK TFYVQGVTIS FSIWDVGGDE KRSKDHIPIA CKDAVAILFM 180
  181 FDLTSRSTLN SVFGWYSQAR KWNKVRLISM FLASE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..93] deduced N/A Confident ab initio structure predictions are available.
    2 View Details [94..215] PSI-BLAST 39.0 Crystal structure of human RAB1A in complex with GDP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.470983068319171 bayes_pls_golite062009
  • hydrolase activity
    		•  0.0582794297634999 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle