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Protein Overview: gi|119935825, gi...

General Information:
Name(s) found: gi|42567638 [NCBI NR]
gi|119935825 [NCBI NR]
Description(s) found:
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  • gi|42567638|ref|NP_196052.2| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|119935825|gb|ABM06005.1| At5g04320 [Arabidopsis thaliana] [NCBI NR]
  • expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G10440.1); similar to hypothetical protein OsI_009118 [Oryza sativa (indica cultivar-group)] (GB:EAY87885.1); contains InterPro domain Shugoshin, C-terminal; (InterPro:IPR011515) | c [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G10440.1); similar to hypothetical protein OsI_009118 [Oryza sativa (indica cultivar-group)] (GB:EAY87885.1); contains InterPro domain Shugoshin, C-terminal; (InterPro:IPR011515) | chr5:1209930-1212377 FORWARD [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: | Shugoshin C terminus | chr5:1209929-1212376 FORWARD LENGTH=419 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • At5g04320 OS=Arabidopsis thaliana GN=At5g04320 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of Q0WTB8, At5g04320 OS=Arabidopsis thaliana GN=At5g04320 PE=2 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 419 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    chromosome, centromeric region [IEA]
    Biological Process: meiotic chromosome segregation [IEA]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLMKALAHR NKLVELSGIE IQKLRINLRS VQEKNLQLAQ ANSQMLAELN TNRDRLKDLQ  60
   61 HELGCKNALL KVKKHLEEQV LPRTHHESKD KVSASASDGD CKSFQVHDIK HKDTKRKRTT 120
  121 RIKSSVSADV KPIPVNDSNS KANRKRRVSG VIDTTGIPEE ICQTEDDIDK GVVSRGVNQD 180
  181 IDNVVNKKFV PDAANPVKES VHRKRQCTRR QSTRFDVQET KQTEKLLEMD GAKESKETAS 240
  241 FSLRRRSARL RHEEAEPCKS LHEGDEVRET IKRRRVSLRL SARFDIQEPH VTETSNADDA 300
  301 RSIVIEESAG SRSESVEPSE SRHETKEITR KRSFSTRRQS TKGKSQTDEA IKEIATDPSL 360
  361 VNTIVQECDQ ETESKDKPKA DENEGMTRRS SVGRPSRHAA EKVQSYREVS LRVKMRRKC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..95] MSA 1.005981 View MSA. Confident ab initio structure predictions are available.
    2 View Details [96..318] deduced N/A No confident structure predictions are available.
    3 View Details [319..419] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle