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View Structure Prediction Details

Protein: gi|119935825, gi...
Organism: Arabidopsis thaliana
Length: 419 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|119935825, gi....

Description E-value Query
Range
Subject
Range
gi|110743584, gi... - gi|145334289|ref|NP_001078526.1| unknown protein [Arabidopsis thaliana], gi|110743584|dbj|BAE99630.1...
579.0 [0..1] [419..52]
gi|51091327 - gi|51091327|dbj|BAD36062.1| hypothetical protein [Oryza sativa Japonica Group]
294.0 [0..3] [417..60]
SGO1_MAIZE - Shugoshin-1 OS=Zea mays GN=SGO1 PE=2 SV=1
163.0 [0..3] [417..69]

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Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLMKALAHR NKLVELSGIE IQKLRINLRS VQEKNLQLAQ ANSQMLAELN TNRDRLKDLQ  60
   61 HELGCKNALL KVKKHLEEQV LPRTHHESKD KVSAS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.825 N/A N/A f.17.1 F1F0 ATP synthase subunit C

Predicted Domain #2
Region A:
Residues: [96-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASDGDCKSFQ VHDIKHKDTK RKRTTRIKSS VSADVKPIPV NDSNSKANRK RRVSGVIDTT  60
   61 GIPEEICQTE DDIDKGVVSR GVNQDIDNVV NKKFVPDAAN PVKESVHRKR QCTRRQSTRF 120
  121 DVQETKQTEK LLEMDGAKES KETASFSLRR RSARLRHEEA EPCKSLHEGD EVRETIKRRR 180
  181 VSLRLSARFD IQEPHVTETS NADDARSIVI EESAGSRSES VEP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [319-419]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SESRHETKEI TRKRSFSTRR QSTKGKSQTD EAIKEIATDP SLVNTIVQEC DQETESKDKP  60
   61 KADENEGMTR RSSVGRPSRH AAEKVQSYRE VSLRVKMRRK C

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle