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Protein Overview: RDM3_ARATH

General Information:
Name(s) found: RDM3_ARATH [Swiss-Prot]
Description(s) found:
Found 8 descriptions.
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  • Protein RNA-directed DNA methylation 3 OS=Arabidopsis thaliana GN=RDM3 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1493 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: DNA methylation [IMP]
    production of siRNA involved in RNA interference [IMP]
    Molecular Function: nucleotide binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS  60
   61 DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE EDLNEEEFDR IMEERYKPGS 120
  121 GFLRYADDDI KDAIEMDALA PTSKDPPIWK VKCAIGRERR SVFCLMHKFV ELRKIGTKLE 180
  181 IISVFSVDHV KGFIFIEADK EHDVLEACKS LVGIYATRMV LLPKAETPNL LTVQKKTKKV 240
  241 SEGTWARVKN GKYKGDLAQI VAVSDTRNKA LIKLIPRIDI QALTQKYGGG VTVQKGQTPA 300
  301 PRLISSSELE EFRPLIQVRR DRDTGITFEH LDSLMLKDGY LYKKVSLDSI SSWGVIPTKD 360
  361 ELLKFTPVDR KETGDVEWIS EIYGEERKKK ILPTCREGGK GEGSGGGKGE GSGGGKGEGS 420
  421 RGGKGEGSSD FKSESSYELY NLVCFSRKDF GLIVGVDDKG DGYKVLKEGI DGPVVVTVGK 480
  481 KEMQNGPFDS KFTALDLNKK QISVNDVVKI SKGPSEGKQG VVRQVYRGII FLYDESEEEN 540
  541 GGYFCCKSQS CEKVKLFTEE SNEKTGGFDG TAFEDFVSSP KSPLSPEKEW QPRERYNSSN 600
  601 QGDIGSTYSI GQKLRIRVGP LKGYLCRVIA LRYSDVTVKL DSQHKIFTVK SEHLAEVRDR 660
  661 NTVLSTSGDA GTGSFQPFGM LGTESSTGDW AIGAGTSSEG GNWNIGGPST DSHESLNIER 720
  721 NMVQLCREKN PWGGSKPTSD VSPTVADDNT SAWANAAAEN KPASASDQPG GWNPWGKTPA 780
  781 SEAGTVSGWG DTSASNVEAS SWEKQGASTS NVADLGSWGT HGGSSGGNKQ DEDSVWGKLC 840
  841 EASESSQKKE ESSWGKKGGS DGESSWGNKD GNSSASKKDG VSWGQQDKGS DESKGGSAWS 900
  901 NQCGDFGSGK KKDGSSGWNK SAEDSNANSK GVPDWGQPND GSSWGKKGDG AASWGKKDDG 960
  961 GSWGKKDDGN KDDGGSSWGK KDDGQKDDGG SSWEKKFDGG SSWGKKDDGG SSWGKKDDGG1020
 1021 SLWGKKDDGG SSWGKEDDGG SLWGKKDDGE SSWGKKDDGE SSWGKKDDGG SSWGKKDEGG1080
 1081 YSEQTFDRGG RGFGGRRGGG RRGGRDQFGR GSSFGNSEDP APWSKPSGGS SWGKQDGDGG1140
 1141 GSSWGKENDA GGGSSWGKQD NGVGSSWGKQ NDGSGGGSSW GKQNDAGGGS SWGKQDSGGD1200
 1201 GSSWGKQDGG GDSGSAWGKQ NNTSGGSSWG KQSDAGGGSS WGKQDGGGGG SSWGKQDGGG1260
 1261 GSGSAWGKQN ETSNGSSWGK QNDSGGGSSW GKQDGGGGGS SWGKQNDGGG GSSWGKQGDG1320
 1321 GSKPWNEHSG GGRGFGERRG GGGFRGGRNQ SGRGGRSFDG GRSSSWKTDN QENTWKSDQS1380
 1381 GGSDWKKGWG EDSNNSKPSG SSAGGCAGNW PSWDTNSKKE TNDKPGDDSK SAWGTSNDQV1440
 1441 NTDNNNDSWN KKPNNDVGTS GEADNAWGGK TNAVAPSPSG SAAWGTGDKK TGW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..127] deduced N/A No confident structure predictions are available.
    2 View Details [128..297] PSI-BLAST 8.09691 No description for 2exuA was found.
    3 View Details [298..533] deduced N/A No confident structure predictions are available.
    4 View Details [534..1493] PSI-BLAST 130.0 No description for 1y0fB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle