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Protein Overview: gi|15242470

General Information:
Name(s) found: gi|15242470 [NCBI NR]
Description(s) found:
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  • gi|15242470|ref|NP_198793.1| repair endonuclease family protein [Arabidopsis thaliana] [NCBI NR]
  • repair endonuclease family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Repair endonuclease family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | repair endonuclease family protein | chr5:15936469-15944777 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • endonuclease/ nuclease/ nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1242 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCPKNQGLAD YVLQKKQEKH CLYWGCNNNN IRDFGRLSSE PRLNRKSRKT KCRNGRGDDF  60
   61 GLGGDVVLGN DFGQNNNSGQ GNDFGQGNDS GQGNDSLCLS ANLLWISLLP NSASDGHIFQ 120
  121 GEPELAQTEL SWVNSDFDTS FELSPHFILI FASSPKIGRV EAQDGYLPGK NLEVVLRGRV 180
  181 SCDPFDLMIC HRAETCYFGW QYFAKVALPW RGVGRALRAK PQVTLSVDPL VPRPKAVEPM 240
  241 MVSWCRAGDY YAVVGVGFVA CFRAASLRRT FHAGDVEFGR FCYRAMRMSP SNAIAAWRKR 300
  301 DSALPDEEVW AFHVEDVKMS CGGLAILFRC GSGLRLTLWV HCGQQEYASV VETDSTYFLG 360
  361 AALVSGLPCG CFEIDKNMQA RPRLICSVAC ELMLSAVDPS RPSLLQSRYK RLARCKASSK 420
  421 VDGRAMIRSS RNRETNINAF RRSPIAASSL IAMFETTFLN LSINVLSAPS IASSVEKCAP 480
  481 LIAMYIDLRK IFGSLWHDAF WRTSLLLPRS IVQARDRGVG FHRRQVPDVR QIVTARQIVG 540
  541 AEQVVAVLQV VAALQVVGAL QVVVVLQVVA PLQVVAVLQV VAVLQVVAVL QVAVILWATA 600
  601 RMLVNESYDK RRWSAASGLR VFWDWSSWRL LSILIFMRLG GAFSASKSLD LTLGSDLCCH 660
  661 KSVNPFDRSC FLSVEPIKDA IASSAAVAAR AVGAAGGYRL SPEPRLNRKS RKTKCRNGRG 720
  721 DDFGLGGDVG LGNDFRQGNN SGQGNDFGQG ARPMSNKRDH KPKGLSEYQE MKFVKAYRNV 780
  781 CDAKDSIDTL KDLSKIKGFG KYMVKLMQGY FVTGAASSEQ EALPGNRAGK KAKGSEPYKP 840
  841 QRNTAAYALL TLHRPEKGKG KAGLGTSKRE WYSGWSCMSK LIEKGLVVKF SNPAKYMLTV 900
  901 EGRNVADDLD PRSRGQSSIP AGPSSRAQEF LATDTGQVDL EGSRAKKFRS SSPCSSSISH 960
  961 ALKACSSSLA SDGTEGVTTI PRLPPLRFGE AFEEVYDVIL ILDDREQFAT KGHKYQQDEY1020
 1021 VLDFIVERKN VDDMRSSIMD NRYKDQKLRL QRSGIKKLIY ILEGDPNQSK TAESIKTACF1080
 1081 TTEILEGFDV VRTNGLGETL RKYGYLTKSI YQYYKSLVND DQRKVADSCP SYDDFVQRCP1140
 1141 DLGKMTISDV FAIQLMQVLS LAKPSFGFLS ATFFAIAVLD KYKTLRSLAS AYSKLDNVSA1200
 1201 QEEMLRNQSN NVICASASKN IYKLVVLNDL YSIVCPFDLF VV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..232] deduced N/A No confident structure predictions are available.
    2 View Details [233..433] deduced N/A No confident structure predictions are available.
    3 View Details [434..663] deduced N/A No confident structure predictions are available.
    4 View Details [664..745] deduced N/A No confident structure predictions are available.
    5 View Details [746..870] deduced N/A No confident structure predictions are available.
    6 View Details [871..964] PSI-BLAST 12.09691 Crystal structure of Pyrococcus furiosus Hef helicase domain
    7 View Details [965..1242] PSI-BLAST 32.0 XPF from Aeropyrum pernix, complex with DNA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.
    7
    Term Confidence Notes
  • catalytic activity
    		•  0.286388432783973 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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    Created and Maintained by: Michael Riffle