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Protein Overview: UBP12_ARATH

General Information:
Name(s) found: UBP12_ARATH [Swiss-Prot]
Description(s) found:
Found 7 descriptions.
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  • Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1116 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: DNA topological change [IEA]
    ubiquitin-dependent protein catabolic process [IEA]
    Molecular Function: ubiquitin-specific protease activity [ISS]
    double-stranded DNA binding [IEA]
    ubiquitin thiolesterase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMMTPPPVD QPEDEEMLVP NSDLVDGPAQ PMEVTQPETA ASTVENQPAE DPPTLKFTWT  60
   61 IPNFSRQNTR KHYSDVFVVG GYKWRILIFP KGNNVDHLSM YLDVSDAASL PYGWSRYAQF 120
  121 SLAVVNQIHT RYTVRKETQH QFNARESDWG FTSFMPLSEL YDPSRGYLVN DTVLVEAEVA 180
  181 VRKVLDYWSY DSKKETGFVG LKNQGATCYM NSLLQTLYHI PYFRKAVYHM PTTENDAPTA 240
  241 SIPLALQSLF YKLQYNDTSV ATKELTKSFG WDTYDSFMQH DVQELNRVLC EKLEDKMKGT 300
  301 VVEGTIQQLF EGHHMNYIEC INVDFKSTRK ESFYDLQLDV KGCKDVYASF DKYVEVERLE 360
  361 GDNKYHAEGH GLQDAKKGVL FIDFPPVLQL QLKRFEYDFM RDTMVKINDR YEFPLELDLD 420
  421 REDGKYLSPD ADRSVRNLYT LHSVLVHSGG VHGGHYYAFI RPTLSDQWYK FDDERVTKED 480
  481 LKRALEEQYG GEEELPQTNP GFNNNPPFKF TKYSNAYMLV YIRESDKDKI ICNVDEKDIA 540
  541 EHLRVRLKKE QEEKEDKRRY KAQAHLYTII KVARDEDLKE QIGKDIYFDL VDHDKVRSFR 600
  601 IQKQTPFQQF KEEVAKEFGV PVQLQRFWIW AKRQNHTYRP NRPLTPQEEL QPVGQIREAS 660
  661 NKANTAELKL FLEVEHLDLR PIPPPEKSKE DILLFFKLYD PEKAVLSYAG RLMVKSSSKP 720
  721 MDITGKLNEM VGFAPDEEIE LFEEIKFEPC VMCEHLDKKT SFRLCQIEDG DIICFQKPLV 780
  781 NKEIECLYPA VPSFLEYVQN RQLVRFRALE KPKEDEFVLE LSKQHTYDDV VEKVAEKLGL 840
  841 DDPSKLRLTS HNCYSQQPKP QPIKYRGVDH LSDMLVHYNQ TSDILYYEVL DIPLPELQGL 900
  901 KTLKVAFHHA TKEEVVIHNI RLPKQSTVGD VINELKTKVE LSHPDAELRL LEVFYHKIYK 960
  961 IFPSTERIEN INDQYWTLRA EEIPEEEKNI GPNDRLILVY HFAKETGQNQ QVQNFGEPFF1020
 1021 LVIHEGETLE EIKNRIQKKL HVSDEDFAKW KFAFMSMGRP EYLQDTDVVY NRFQRRDVYG1080
 1081 AFEQYLGLEH ADTTPKRAYA ANQNRHAYEK PVKIYN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..591] PSI-BLAST 73.221849 Crystal structure of HAUSP
    2 View Details [592..689] deduced N/A No confident structure predictions are available.
    3 View Details [690..862] deduced N/A No confident structure predictions are available.
    4 View Details [863..942] deduced N/A No confident structure predictions are available.
    5 View Details [943..1116] MSA 1.147993 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle