YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|15239221

General Information:
Name(s) found: gi|15239221 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|15239221|ref|NP_198440.1| 3'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • 3'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 3'-5' exonuclease domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | 3'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein | chr5:14047101-14052635 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 838 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDGNMDVDE SPVSWKVKSL EKLIDGSSFS STLSRLSSSS RLIPTSRDFH FYYNFDEFKR  60
   61 PIDEITGTSQ STLATIGDSE QVWGKSMKFP GDVDDVYAED WLCNVNDELI ERFDVSVDEF 120
  121 QRIRKKEKEI AVNGGGSVID VKMAERDKNS SGKAKVPFHV PTIKKPQEEY NILVNNANLP 180
  181 FEHVWLERSE DDLRAMHPLE KFSVLDFVDK DVNEMEPVKP LPLEQTPFKF VQEVKDLKEL 240
  241 VAKLRSVEEF AVDLEHNQYR SFQGLTCLMQ ISTRTEDYIV DTFKLRIHIG PYLREIFKDP 300
  301 KKKKVMHGAD RDIIWLQRDF GIYVCNLFDT GQASRVLNLE RNSLEFLLQH FCGVTANKEY 360
  361 QNADWRIRPL PEEMTRYARE DTHYLLYIYD LIKLELQRMA KDDAHTDSPL LEVYKRSYDV 420
  421 CTQLYEKELL TENSYLHVYG LQAAGFNAAQ LAIVAGLCEW RDFIARAEDE STGYVLPNKV 480
  481 LLEIAKEMPD SVGKLRRMLK SKHPYIERNV DSVVSVIRQS MQHYAAFESA ALSLKDVSPG 540
  541 NVMDKNIEPI SEKKDLHTGD VASPSLKENS SQLESTRDLI MGAANTNEGR GLGSGLFGSA 600
  601 KVSAAVRISK KPSSGLGALL GNAASKKKSR TDEKVKEDVK LEQIRSSVNL SFHSFTEKVP 660
  661 DSKSTSETSP KVYGKPEEMS STMPASVSKE DGVKELKDDS EEASEIVGTS GRVSESKVSS 720
  721 SEMGDIILLE NGDEKKVDAE DEPMSLSELS TNFQKCFKSM NKSKKAQKQT EFLNIEPFDY 780
  781 EAARKEVKFG EGHKGRQGKR EAAAGQKKGS TQEQSEFGQG KRRQAFPASG NRSMSFKN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..838] PSI-BLAST 138.0 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment)


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle