YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|15239221
Organism: Arabidopsis thaliana
Length: 838 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|15239221.

Predicted Domain #1
Region A:
Residues: [1-838]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDGNMDVDE SPVSWKVKSL EKLIDGSSFS STLSRLSSSS RLIPTSRDFH FYYNFDEFKR  60
   61 PIDEITGTSQ STLATIGDSE QVWGKSMKFP GDVDDVYAED WLCNVNDELI ERFDVSVDEF 120
  121 QRIRKKEKEI AVNGGGSVID VKMAERDKNS SGKAKVPFHV PTIKKPQEEY NILVNNANLP 180
  181 FEHVWLERSE DDLRAMHPLE KFSVLDFVDK DVNEMEPVKP LPLEQTPFKF VQEVKDLKEL 240
  241 VAKLRSVEEF AVDLEHNQYR SFQGLTCLMQ ISTRTEDYIV DTFKLRIHIG PYLREIFKDP 300
  301 KKKKVMHGAD RDIIWLQRDF GIYVCNLFDT GQASRVLNLE RNSLEFLLQH FCGVTANKEY 360
  361 QNADWRIRPL PEEMTRYARE DTHYLLYIYD LIKLELQRMA KDDAHTDSPL LEVYKRSYDV 420
  421 CTQLYEKELL TENSYLHVYG LQAAGFNAAQ LAIVAGLCEW RDFIARAEDE STGYVLPNKV 480
  481 LLEIAKEMPD SVGKLRRMLK SKHPYIERNV DSVVSVIRQS MQHYAAFESA ALSLKDVSPG 540
  541 NVMDKNIEPI SEKKDLHTGD VASPSLKENS SQLESTRDLI MGAANTNEGR GLGSGLFGSA 600
  601 KVSAAVRISK KPSSGLGALL GNAASKKKSR TDEKVKEDVK LEQIRSSVNL SFHSFTEKVP 660
  661 DSKSTSETSP KVYGKPEEMS STMPASVSKE DGVKELKDDS EEASEIVGTS GRVSESKVSS 720
  721 SEMGDIILLE NGDEKKVDAE DEPMSLSELS TNFQKCFKSM NKSKKAQKQT EFLNIEPFDY 780
  781 EAARKEVKFG EGHKGRQGKR EAAAGQKKGS TQEQSEFGQG KRRQAFPASG NRSMSFKN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 138.0
Match: 1bgxT
Description: 5' to 3' exonuclease domain of DNA polymerase Taq; Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle