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Protein Overview: gi|15241106

General Information:
Name(s) found: gi|15241106 [NCBI NR]
Description(s) found:
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  • gi|15241106|ref|NP_198149.1| binding [Arabidopsis thaliana] [NCBI NR]
  • expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | binding | chr5:10004724-10015433 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1629 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVAALEAD LRALSAEARR RYPAVKDGAE HAILKLRSSS SASDLSSNED ILRIFLMACG  60
   61 VRNTKLSVIG LSCLQKLISH DAVEPSSLKE ILYTLKDAKQ LSDAVFPYLQ HSEMAEENIQ 120
  121 LKTLQTILII FQSRLHPETE DNMVLGLSIC LTLLDNNRPP SVYNTAAATF RQAVALIFDQ 180
  181 VVSAESLPMP KFGSSSQTAR TGSVTGDLSQ NINNSGPLEK DVIGGRLTIR DTLSETGKLG 240
  241 LRLLEDLTAS AAGFASPNLF PSDDIASDQF RDFVTAQLEG EMVEPYFRRL VLRSVAHIIR 300
  301 LYSSSLITEC EVQYAKLYLF ILNFVLLTTK EQAHEMCSAD DYDLCKFSLL MCVHPISVCA 360
  361 QVFLSMLVKA TFLDLPLWHR ILVLEILRGF CVEARTLRIL FQNFDMHPKN TNVVESMVKA 420
  421 LARVVSSIQE TSEESLAAVA GMFSSKAKGI EWILDNDASS AAVLVASEAH AITLAIEGLL 480
  481 GVVFTVATLT DEAVDVGELE SPRYEHLPSS DYTGKTSLLC ISMVDSLWLT ILDAFSLILS 540
  541 RSQGEAIVLE ILKGYQAFTQ ACGVLHAVEP LNSFLASLCK FTIVLPTDVE RKSVVQSPVS 600
  601 KRSEVQVDLK DVIVLTPKNV QALRTLFNIA HRLHNVLGPS WVLVLETLAA LDRAIHSPHA 660
  661 TTQEVATAVP KLTREPSRQY ADFSILSSLN SQLFESSALM QVSSVKSLLS ALHMLSHQSM 720
  721 TETSGSVSSA SRVEPLWDQV VGHFLELAEH SNQNLRNMAL DALDQSICAV LGSEQFGEDP 780
  781 ARSRDATLDV DSKSTEVKSV ECAVLSSLRV LYFSAQKADV RVGSLKILLH VLERCGEKLY 840
  841 YSWSSILEML RSVADASEKD VATLGFQSLR VIMSDGLPTL PEDCLHVCID VTGAYSAQKT 900
  901 DLNISLTAIG LLWTLTDFVA KGLHHGSLVE KGSGFNNADS TPQQTNGEDG EKHMGSNSGK 960
  961 SDYEAPIQVV NHEKLLFLVF SLIQKLVDDE RPEVRNSAVR TFFQILGSHG NKLSKSMWED1020
 1021 CLWNYIFPML DGASHKAATS SKDEWQGKEI GTRGGKAVHM LIHHSRNSAQ KQWDETFVLV1080
 1081 LGGIARLFRS YFPLLESLPN FWSGWESLLA FVKKSIFNGS KEVSLAAINC LQTAVVSHCV1140
 1141 KGNLQLRYLN SVLDVYELVF QKSSSYTGDT AAKVKQEILH GLGELYVQSS KMFDDKMYMQ1200
 1201 LLGIVDLAIK QAIINSENFE TEYGHVPPVL RHVLEILPSL GPPEHLSSMW LILLREFLHY1260
 1261 LPRVDSVLPN DEGEIQQNNT GSEVLEQKAD ASSETIPTTR ITTNMFAEKL IPALIELLLQ1320
 1321 APAVEKYILF PEVIQNLRRC MMTRRDNPDG SLWKVAAEGF NRLLVEDVKL CSVGGETELK1380
 1381 ISKTARIRIW KEIGDVYDIF LVGYCGRALS SNSLPAATLK ANETLEIALL NGLGDIILKS1440
 1441 TVDAPREVLE RLVSTLDRCA SRTCSLPVET VELMPAHCSR FSLTCLQKLF SLSSSETENW1500
 1501 HSTRAEVSKI SITTLMARCE FILSRFLIDE NNLGNRPIPT ARLEEIIFTL QELYRLSIHP1560
 1561 EVASVLPLQP YLKNVLREDN RDTRAHLLVL FPSLCEIVLS REMRVRELVQ ILLRAVATEL1620
 1621 GLEKVSLSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..212] MSA 1.189989 View MSA. No confident structure predictions are available.
    2 View Details [213..565] PSI-BLAST 50.09691 No description for 2r0dA was found.
    3 View Details [566..662] deduced N/A No confident structure predictions are available.
    4 View Details [663..815] MSA 1.154983 View MSA. No confident structure predictions are available.
    5 View Details [816..934] deduced N/A No confident structure predictions are available.
    6 View Details [935..1211] MSA 2.161991 View MSA. No confident structure predictions are available.
    7 View Details [1212..1297] deduced N/A No confident structure predictions are available.
    8 View Details [1298..1467] MSA 1.112997 View MSA. No confident structure predictions are available.
    9 View Details [1468..1629] MSA 2.049995 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle