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View Structure Prediction Details

Protein: gi|15241106
Organism: Arabidopsis thaliana
Length: 1629 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|15241106.

Predicted Domain #1
Region A:
Residues: [1-212]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVAALEAD LRALSAEARR RYPAVKDGAE HAILKLRSSS SASDLSSNED ILRIFLMACG  60
   61 VRNTKLSVIG LSCLQKLISH DAVEPSSLKE ILYTLKDAKQ LSDAVFPYLQ HSEMAEENIQ 120
  121 LKTLQTILII FQSRLHPETE DNMVLGLSIC LTLLDNNRPP SVYNTAAATF RQAVALIFDQ 180
  181 VVSAESLPMP KFGSSSQTAR TGSVTGDLSQ NI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [213-565]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNSGPLEKDV IGGRLTIRDT LSETGKLGLR LLEDLTASAA GFASPNLFPS DDIASDQFRD  60
   61 FVTAQLEGEM VEPYFRRLVL RSVAHIIRLY SSSLITECEV QYAKLYLFIL NFVLLTTKEQ 120
  121 AHEMCSADDY DLCKFSLLMC VHPISVCAQV FLSMLVKATF LDLPLWHRIL VLEILRGFCV 180
  181 EARTLRILFQ NFDMHPKNTN VVESMVKALA RVVSSIQETS EESLAAVAGM FSSKAKGIEW 240
  241 ILDNDASSAA VLVASEAHAI TLAIEGLLGV VFTVATLTDE AVDVGELESP RYEHLPSSDY 300
  301 TGKTSLLCIS MVDSLWLTIL DAFSLILSRS QGEAIVLEIL KGYQAFTQAC GVL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.09691
Match: 2r0dA
Description: No description for 2r0dA was found.

Predicted Domain #3
Region A:
Residues: [566-662]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HAVEPLNSFL ASLCKFTIVL PTDVERKSVV QSPVSKRSEV QVDLKDVIVL TPKNVQALRT  60
   61 LFNIAHRLHN VLGPSWVLVL ETLAALDRAI HSPHATT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [663-815]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEVATAVPKL TREPSRQYAD FSILSSLNSQ LFESSALMQV SSVKSLLSAL HMLSHQSMTE  60
   61 TSGSVSSASR VEPLWDQVVG HFLELAEHSN QNLRNMALDA LDQSICAVLG SEQFGEDPAR 120
  121 SRDATLDVDS KSTEVKSVEC AVLSSLRVLY FSA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [816-934]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKADVRVGSL KILLHVLERC GEKLYYSWSS ILEMLRSVAD ASEKDVATLG FQSLRVIMSD  60
   61 GLPTLPEDCL HVCIDVTGAY SAQKTDLNIS LTAIGLLWTL TDFVAKGLHH GSLVEKGSG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [935-1211]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FNNADSTPQQ TNGEDGEKHM GSNSGKSDYE APIQVVNHEK LLFLVFSLIQ KLVDDERPEV  60
   61 RNSAVRTFFQ ILGSHGNKLS KSMWEDCLWN YIFPMLDGAS HKAATSSKDE WQGKEIGTRG 120
  121 GKAVHMLIHH SRNSAQKQWD ETFVLVLGGI ARLFRSYFPL LESLPNFWSG WESLLAFVKK 180
  181 SIFNGSKEVS LAAINCLQTA VVSHCVKGNL QLRYLNSVLD VYELVFQKSS SYTGDTAAKV 240
  241 KQEILHGLGE LYVQSSKMFD DKMYMQLLGI VDLAIKQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [1212-1297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIINSENFET EYGHVPPVLR HVLEILPSLG PPEHLSSMWL ILLREFLHYL PRVDSVLPND  60
   61 EGEIQQNNTG SEVLEQKADA SSETIP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1298-1467]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTRITTNMFA EKLIPALIEL LLQAPAVEKY ILFPEVIQNL RRCMMTRRDN PDGSLWKVAA  60
   61 EGFNRLLVED VKLCSVGGET ELKISKTARI RIWKEIGDVY DIFLVGYCGR ALSSNSLPAA 120
  121 TLKANETLEI ALLNGLGDII LKSTVDAPRE VLERLVSTLD RCASRTCSLP 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9
Region A:
Residues: [1468-1629]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VETVELMPAH CSRFSLTCLQ KLFSLSSSET ENWHSTRAEV SKISITTLMA RCEFILSRFL  60
   61 IDENNLGNRP IPTARLEEII FTLQELYRLS IHPEVASVLP LQPYLKNVLR EDNRDTRAHL 120
  121 LVLFPSLCEI VLSREMRVRE LVQILLRAVA TELGLEKVSL SS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle