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Protein Overview: gi|22327096

General Information:
Name(s) found: gi|22327096 [NCBI NR]
Description(s) found:
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  • gi|22327096|ref|NP_198105.2| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [NCBI NR]
  • glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Glycoside hydrolase family 28 protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein | chr5:9717506-9721100 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • polygalacturonase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pectin lyase-like superfamily protein | chr5:9717503-9721097 FORWARD LENGTH=458 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Glycoside hydrolase family 28 protein / polygalacturonase (Pectinase) family protein OS=Arabidopsis thaliana GN=At5g27530 PE=4 SV=1 [ARATH-contam.fasta]
  • Pectin lyase-like superfamily protein OS=Arabidopsis thaliana GN=At5g27530 PE=3 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 458 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDMVTIQKN GDIPAFVRVT TQWHGLMSFP ETILRISILI NFICFGLVNG QIYNVLKFGA  60
   61 EGDGQTDDSN AFLQAWNATC GGEENINTLF IPSGKTYLLQ PIEFKGPCKS TSIKLQLDGI 120
  121 IVAPSNITSW SNPKSQTWIS FSGVPGLMID GSGTINGRGS SFWEALHICN CNNLTINGIT 180
  181 SIDSPKSHIS IKNCHYVAIS KINILAPENS PNTDGIDISY STNVNIFDST IQTGDDCIAI 240
  241 NTGSSSINIT QVNCGPGHGI SVGSLGADGE NAAVSDVYVT QCTFNKTTNG ARIKTWQGGQ 300
  301 GYARNISFEN ITLINVQNPI IIDQQYTDKV LLDATKDSAV AISSVKYVGF QGTTLNEDAI 360
  361 MLKCSAITYC KDMVIDDIEV TMENGEKPKV ECENVEGESS DNDLMRECFN SNSTFSGGSV 420
  421 GGFGWVYECP CVRMGGPNWR FSSRISRTFL DPSSFHVH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..458] PSI-BLAST 47.39794 RHAMNOGALACTURONASE A FROM ASPERGILLUS ACULEATUS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • polygalacturonase activity
    		•  3.63113788404352 bayes_pls_golite062009
  • catalytic activity
    		•  0.67288476528593 bayes_pls_golite062009
  • hydrolase activity
    		•  0.329563804802467 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.59

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle