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Protein Overview: RPAP2_ARATH

General Information:
Name(s) found: RPAP2_ARATH [Swiss-Prot]
Description(s) found:
Found 7 descriptions.
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  • Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Arabidopsis thaliana GN=At5g26760 PE=2 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 735 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDNEAIAI NDAVHKLQLY MLENTTDQNQ LFAARKLMSR SDYEDVVTER AIAKLCGYTL  60
   61 CQRFLPSDVS RRGKYRISLK DHKVYDLQET SKFCSAGCLI DSKTFSGSLQ EARTLEFDSV 120
  121 KLNEILDLFG DSLEVKGSLD VNKDLDLSKL MIKENFGVRG EELSLEKWMG PSNAVEGYVP 180
  181 FDRSKSSNDS KATTQSNQEK HEMDFTSTVI MPDVNSVSKL PPQTKQASTV VESVDGKGKT 240
  241 VLKEQTVVPP TKKVSRFRRE KEKEKKTFGV DGMGCAQEKT TVLPRKILSF CNEIEKDFKN 300
  301 FGFDEMGLAS SAMMSDGYGV EYSVSKQPQC SMEDSLSCKL KGDLQTLDGK NTLSGSSSGS 360
  361 NTKGSKTKPE KSRKKIISVE YHANSYEDGE EILAAESYER HKAQDVCSSS EIVTKSCLKI 420
  421 SGSKKLSRSV TWADQNDGRG DLCEVRNNDN AAGPSLSSND IEDVNSLSRL ALAEALATAL 480
  481 SQAAEAVSSG NSDASDATAK AGIILLPSTH QLDEEVTEEH SEEEMTEEEP TLLKWPNKPG 540
  541 IPDSDLFDRD QSWFDGPPEG FNLTLSNFAV MWDSLFGWVS SSSLAYIYGK EESAHEEFLL 600
  601 VNGKEYPRRI IMVDGLSSEI KQTIAGCLAR ALPRVVTHLR LPIAISELEK GLGSLLETMS 660
  661 LTGAVPSFRV KEWLVIVLLF LDALSVSRIP RIAPYISNRD KILEGSGIGN EEYETMKDIL 720
  721 LPLGRVPQFA TRSGA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..191] MSA 7.041986 View MSA. No confident structure predictions are available.
    2 View Details [192..275] deduced N/A No confident structure predictions are available.
    3 View Details [276..370] deduced N/A No confident structure predictions are available.
    4 View Details [371..538] deduced N/A No confident structure predictions are available.
    5 View Details [539..735] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle