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Protein Overview: SDN5_ARATH

General Information:
Name(s) found: SDN5_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|42568083|ref|NP_197952.2| exonuclease family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|215274964|sp|Q8L7M4.2|SDN5_ARATH RecName: Full=Small RNA degrading nuclease 5 [NCBI NR]
  • Small RNA degrading nuclease 5 OS=Arabidopsis thaliana GN=SDN5 PE=2 SV=2 [Swiss-Prot]
  • exonuclease family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Exonuclease family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | exonuclease family protein | chr5:8979764-8982727 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • exonuclease [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr5:8979761-8982724 REVERSE LENGTH=567 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 567 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA][ISS]
    Biological Process: NONE FOUND
    Molecular Function: nucleic acid binding [IEA]
    exonuclease activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSKRKRGA ETAAEDCDDG TDKSNTGNSF FDIYGPEAKA ELDFKSPETT LNLQDVQGLV  60
   61 TWVLAEGFMP SWVFIKNKPL IPKVVLLYLP GLDAALYLSH SKTLSSLKSC CGNPMALLAL 120
  121 SCVVDEMRTI DTILTCKGRK KKTVTSSVEP PPLVSSPEAC NLMGKSFVEL TKDIPFPVSY 180
  181 YTLSQKEMEQ NGYTFEKLEL TPTLPAPSGS CPPEIVALDC EMCITKEGLE LTRVTLVDIQ 240
  241 GQVLLDKLVM PTNPITDYNT RYSGITAVMM EGVTTTLKDI QEEFLKLVFK ETILVGHSLE 300
  301 NDLLSLKISH NLVIDTAVLY KHPHGRSYKT KLRILAKKFL AREIQESESG HDSAEDAKAA 360
  361 MDLALLKIKH GPDFGSPPEV IRKKLLAVLN ESGKTTSIID NINIVKRYAS ESSNAIPVSS 420
  421 DDEALSKAVK EVKNKRSQFV WTQFSELNAH FQSRADDPQK LNSRLAEMIS LLTCNKKSGL 480
  481 KKSNVSPETK EILKKMNERV QSLYAALPTN AMFIVCTGHG DTSIVHRVRK MLKDEDEIGF 540
  541 DREKLVKVLE ELQAQAEVAL CFVGIKQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..207] MSA 1.474986 View MSA. No confident structure predictions are available.
    2 View Details [208..399] PSI-BLAST 29.0 human ISG20
    3 View Details [400..567] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.722279828632226 bayes_pls_golite062009
  • hydrolase activity
    		•  0.29272620969648 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.24934115119652 bayes_pls_golite062009
  • nuclease activity
    		•  0.239989310123501 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle