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Protein Overview: gi|18413894, gi|...

General Information:
Name(s) found: gi|41619514 [NCBI NR]
gi|18413894 [NCBI NR]
Description(s) found:
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  • gi|41619514|gb|AAS10119.1| MYB transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|18413894|ref|NP_568099.1| MYB3R-5 (MYB DOMAIN PROTEIN 3R-5); DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • myb family transcription factor (MYB3R5) [Arabidopsis thaliana]gi|41619514|gb|AAS10119.1| MYB transcription factor [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Myb family transcription factor (MYB3R5) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATMYB3R5, MYB3R-5 | MYB3R-5 (myb domain protein 3R-5); DNA binding / transcription factor | chr5:483443-486345 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • MYB3R-5; DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • MYB transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ATMYB3R5, MYB3R-5 | myb domain protein 3r-5 | chr5:483445-486347 REVERSE LENGTH=548 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • | Symbols: MYB3R-5 | myb domain protein 3r-5 | chr5:483445-486347 REVERSE LENGTH=548 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • MYB transcription factor OS=Arabidopsis thaliana GN=MYB3R-5 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 548 amino acids

    Gene Ontology:
    Cellular Component: chloroplast [IEA]
    Biological Process: regulation of transcription, DNA-dependent [ISS]
    regulation of transcription [IEA]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSSNPPVC SPEKEERSEM KIEIQCMENK QPLAASCSSA SEGSGCFFLK SPEIATPATV  60
   61 SSFPRRTSGP MRRAKGGWTP EEDETLRRAV EKYKGKRWKK IAEFFPERTE VQCLHRWQKV 120
  121 LNPELVKGPW TQEEDDKIVE LVKKYGPAKW SVIAKSLPGR IGKQCRERWH NHLNPGIRKD 180
  181 AWTVEEESAL MNSHRMYGNK WAEIAKVLPG RTDNAIKNHW NSSLKKKLEF YLATGNLPPP 240
  241 ASKFIVLKDI ADGDRDSKQS SATKPFKDSD SLTQTSSGNT DSNEVGRDHF DSSSALLEEV 300
  301 AASRRIGVNE YACSPVEYKP QLPNLEPISE EVRINSKAYF ERSIQRKVEN GFGTPKHGNL 360
  361 YYKSPLDYYF PSEADLQHMY GYECGCSPGA ASPVSLMTTP CNKDSGLTAT RSPESFLREA 420
  421 ARTFPNTPSI FRKRRKVVLA AKTDAVVVVN GVVKEVDRKE ESKDMRKSLL LETTDNCSDD 480
  481 EELGLNGNAF NLSPPYRLRA KRTAVIKSRQ LEFTSEKEKQ PDNEIEFTSA KEKQPDNEIK 540
  541 TSEEDKPV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..240] PSI-BLAST 52.154902 c-Myb, DNA-binding domain
    2 View Details [241..414] MSA 1.554996 View MSA. No confident structure predictions are available.
    3 View Details [415..548] MSA 3.109997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle