YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: PP385_ARATH

General Information:
Name(s) found: PP385_ARATH [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • gi|42567862|ref|NP_197034.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] [NCBI NR]
  • gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300 [NCBI NR]
  • Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2 [Swiss-Prot]
  • pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Pentatricopeptide (PPR) repeat-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:4968387-4970033 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:4968384-4970030 REVERSE LENGTH=548 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 548 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRRQTNDRT TNRRRPKLWQ NCKNIRTLKQ IHASMVVNGL MSNLSVVGEL IYSASLSVPG  60
   61 ALKYAHKLFD EIPKPDVSIC NHVLRGSAQS MKPEKTVSLY TEMEKRGVSP DRYTFTFVLK 120
  121 ACSKLEWRSN GFAFHGKVVR HGFVLNEYVK NALILFHANC GDLGIASELF DDSAKAHKVA 180
  181 WSSMTSGYAK RGKIDEAMRL FDEMPYKDQV AWNVMITGCL KCKEMDSARE LFDRFTEKDV 240
  241 VTWNAMISGY VNCGYPKEAL GIFKEMRDAG EHPDVVTILS LLSACAVLGD LETGKRLHIY 300
  301 ILETASVSSS IYVGTPIWNA LIDMYAKCGS IDRAIEVFRG VKDRDLSTWN TLIVGLALHH 360
  361 AEGSIEMFEE MQRLKVWPNE VTFIGVILAC SHSGRVDEGR KYFSLMRDMY NIEPNIKHYG 420
  421 CMVDMLGRAG QLEEAFMFVE SMKIEPNAIV WRTLLGACKI YGNVELGKYA NEKLLSMRKD 480
  481 ESGDYVLLSN IYASTGQWDG VQKVRKMFDD TRVKKPTGVS LIEEDDDKLM MRYLLSSEPE 540
  541 SRSRGRIN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..548] PSI-BLAST 17.522879 No description for 2gw1A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle