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Protein Overview: gi|42572891

General Information:
Name(s) found: gi|42572891 [NCBI NR]
Description(s) found:
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  • gi|42572891|ref|NP_974542.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] [NCBI NR]
  • RabGAP/TBC domain-containing protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 RabGAP/TBC domain-containing protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | RabGAP/TBC domain-containing protein | chr4:7970295-7973897 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr4:7970299-7973901 FORWARD LENGTH=408 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • RabGAP/TBC domain-containing protein OS=Arabidopsis thaliana GN=At4g13730 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of Q9SVN9, Ypt/Rab-GAP domain of gyp1p superfamily protein OS=Arabidopsis thaliana GN=At4g13730 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 408 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEA]
    Biological Process: regulation of Rab GTPase activity [IEA]
    Molecular Function: Rab GTPase activator activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKGIPEWL NSSLWSSSPP IDDRHLRNPA ATSITPPSPP IVERPPFSSS PSAISTAPAP  60
   61 PLPVRPPSKS EINDLQNGSG NDGAGIETPA VSSVEDVSRK AQVVAELSKK VIDLKELRKI 120
  121 ASQGLPDDAG IRSIVWKLLL DYLSPDRSLW SSELAKKRSQ YKQFKEELLM NPSEVTRKMD 180
  181 KSKGGDSNDP KIESPGALSR SEITHEDHPL SLGTTSLWNN FFKDTEVLEQ IERDVMRTHP 240
  241 DMHFFSGDSA VAKSNQDALK NILTIFAKLN PGIRYVQGMN EILAPIFYIF KNDPDKGNAA 300
  301 YAESDAFFCF VELMSGFRDN FCQQLDNSVV GIRYTITRLS LLLKHHDEEL WRHLEVTTKI 360
  361 NPQFYAFRWI TLLLTQEFNF VESLHIWDTL LSDPEGPQVV FSLLLFSF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..78] deduced N/A No confident structure predictions are available.
    2 View Details [79..408] PSI-BLAST 45.221849 No description for 2qfzA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle