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View Structure Prediction Details

Protein: gi|42572891
Organism: Arabidopsis thaliana
Length: 408 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42572891.

Description E-value Query
Range
Subject
Range
gi|7268077, gi|7... - pir||T05242 hypothetical protein F18A5.120 - Arabidopsis thaliana, gi|7268077|emb|CAB78415.1| putat...
319.0 [0..1] [406..1]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKGIPEWL NSSLWSSSPP IDDRHLRNPA ATSITPPSPP IVERPPFSSS PSAISTAPAP  60
   61 PLPVRPPSKS EINDLQNG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [79-408]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGNDGAGIET PAVSSVEDVS RKAQVVAELS KKVIDLKELR KIASQGLPDD AGIRSIVWKL  60
   61 LLDYLSPDRS LWSSELAKKR SQYKQFKEEL LMNPSEVTRK MDKSKGGDSN DPKIESPGAL 120
  121 SRSEITHEDH PLSLGTTSLW NNFFKDTEVL EQIERDVMRT HPDMHFFSGD SAVAKSNQDA 180
  181 LKNILTIFAK LNPGIRYVQG MNEILAPIFY IFKNDPDKGN AAYAESDAFF CFVELMSGFR 240
  241 DNFCQQLDNS VVGIRYTITR LSLLLKHHDE ELWRHLEVTT KINPQFYAFR WITLLLTQEF 300
  301 NFVESLHIWD TLLSDPEGPQ VVFSLLLFSF 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.221849
Match: 2qfzA
Description: No description for 2qfzA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle