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Protein Overview: gi|18419780

General Information:
Name(s) found: gi|18419780 [NCBI NR]
Description(s) found:
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  • gi|18419780|ref|NP_567996.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24521.1); contains InterPro domain Protein of unknown function DUF641, plant (InterPro:IPR006943); contains Inte [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24521.1); contains InterPro domain Protein of unknown function DUF641, plant (InterPro:IPR006943); contains InterPro domain Sec1-like protein; (InterPro:IPR001619) | chr4:17082582-17083346 FORWARD [TAIR_A_Thaliana_na_04-12-2008_reversed.fasta]
  • | Symbols: | Sec1/munc18-like (SM) proteins superfamily | chr4:17082579-17083343 FORWARD LENGTH=236 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Sec1/munc18-like (SM) family protein OS=Arabidopsis thaliana GN=At4g36100 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 236 amino acids

    Gene Ontology:
    Cellular Component: peroxisome [IDA]
    Biological Process: vesicle-mediated transport [IEA]
    vesicle docking during exocytosis [IEA]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEESINQNPE AMEALISNLF GNISSLKSAY IELQSAHTPY DPEKIQAADK VVISELKNLS  60
   61 EMKHFYRENN PKPVCVSPQD SRLAAEIQEQ QSLLKTYEVM VKRSLMEQSL DAYDEKEKEM 120
  121 MMMIGSINRT ELLSVLKAKG TNIDKLRFAI MYLISLESVN QTEVEAVEAA LREAKIDTST 180
  181 FQYVKKIKSL NVSLAANSAS KSHIALWPVY KRGDRAGVKN LLSSDEKLAV ARAVEC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..236] PSI-BLAST 45.39794 Sly1P protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle