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View Structure Prediction Details

Protein: gi|18419780
Organism: Arabidopsis thaliana
Length: 236 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18419780.

Description E-value Query
Range
Subject
Range
gi|109083219 - gi|109083219|ref|XP_001107671.1| PREDICTED: similar to vesicle transport-related protein isoform a [...
217.0 [0..34] [235..410]

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Predicted Domain #1
Region A:
Residues: [1-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEESINQNPE AMEALISNLF GNISSLKSAY IELQSAHTPY DPEKIQAADK VVISELKNLS  60
   61 EMKHFYRENN PKPVCVSPQD SRLAAEIQEQ QSLLKTYEVM VKRSLMEQSL DAYDEKEKEM 120
  121 MMMIGSINRT ELLSVLKAKG TNIDKLRFAI MYLISLESVN QTEVEAVEAA LREAKIDTST 180
  181 FQYVKKIKSL NVSLAANSAS KSHIALWPVY KRGDRAGVKN LLSSDEKLAV ARAVEC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.39794
Match: 1mqsA
Description: Sly1P protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle