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Protein Overview: gi|22329091

General Information:
Name(s) found: gi|22329091 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|22329091|ref|NP_194963.2| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 342 amino acids

    Gene Ontology:
    Cellular Component: endomembrane system [IEA]
    Biological Process: carbohydrate metabolic process [IEA][ISS]
    Molecular Function: polygalacturonase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNFFFTMKD FKTLFSLIIV ISYYFEYGEG QRILSIKDFI IDTNHTIIDY SQAFQEAWKG  60
   61 LCEDETPNGS ALVIRKNETY TLQPSTFRGP CVSSNIHIQI DGKLEGPRKP IYWKNKENRS 120
  121 WLGFKDVEGL VINGSGVLNP HGEAWWKSVS LSKRPTTISF ASCMDIVYNG LHHINSPRNH 180
  181 ISIYGCTNAT LSNLDISAPE DSPNTDGINI CLSHRIQILD SSIQTGDDCV AITGGRGGSS 240
  241 DINITGVACG PGHGISIGSL GKDNERDDIV ENVNVRSCSF TGTQNGARIK TWNGGRGLAK 300
  301 NILYENITLI DAGYPIIINQ HYFDNKKKHY FDKSFLKVIF KL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..342] PSI-BLAST 31.522879 RHAMNOGALACTURONASE A FROM ASPERGILLUS ACULEATUS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.142826098671881 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.63

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle