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Protein Overview: gi|30695806

General Information:
Name(s) found: gi|30695806 [NCBI NR]
Description(s) found:
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  • gi|30695806|ref|NP_191905.3| WD-40 repeat family protein [Arabidopsis thaliana] [NCBI NR]
  • WD-40 repeat family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 WD-40 repeat family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | WD-40 repeat family protein | chr3:23441984-23448216 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • EMB2221 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:23431009-23437241 REVERSE LENGTH=1102 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Protein transport protein SEC31 OS=Arabidopsis thaliana GN=At3g63460 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of Q8L611, Transport protein SEC31 OS=Arabidopsis thaliana GN=At3g63460 PE=1 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 1102 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACIKGVGRS ASVALAPDAP YMAAGTMAGA VDLSFSSSAN LEIFKLDFQS DDRDLPLVGE  60
   61 IPSSERFNRL AWGRNGSGSE EFALGLIAGG LVDGNIDLWN PLSLIGSQPS ENALVGHLSV 120
  121 HKGPVRGLEF NAISSNLLAS GADDGEICIW DLLKPSEPSH FPLLKGSGSA TQGEISFISW 180
  181 NRKVQQILAS TSYNGTTVIW DLRKQKPIIN FADSVRRRCS VLQWNPNVTT QIMVASDDDS 240
  241 SPTLKLWDMR NIMSPVREFT GHQRGVIAME WCPSDSSYLL TCAKDNRTIC WDTNTAEIVA 300
  301 ELPAGNNWNF DVHWYPKIPG VISASSFDGK IGIYNIEGCS RYGVEENNFA PLKAPKWYKR 360
  361 PVGASFGFGG KLVSCHARAP AKGTSSILSE VFLHSLVTEQ SLVSRTSEFE AAIENGDMTS 420
  421 LRGLCEKKSE ETESEEEKET WGLLKIMFEE EGTSRTKLIS HLGFTLPVAE KDQAVDGLSS 480
  481 DLNGIRLEDT AADALDLDDS NEAAAFAMDN GEDFFNNFPA KPDTPVSTSA KDFMPSDTDF 540
  541 STKGEETQEM QEEEEESSDP VFDNAIQRAL IVGDYKEAVD QCITANKMAD ALVIAHVGGT 600
  601 ALWESTREKY LKTSSAPYMK VVSAMVNNDL RSLIYTRSHK FWKETLALLC TFAQGEQWTT 660
  661 LCDALASKLM AAGNTLAAVL CYICAGNVDR TVEIWSRSLA NERDGRSYAE LLQDLMEKTL 720
  721 VLALATGNKK FSASLCKLFE SYAEILASQG LLTTAMKYLK VLDSGGLSPE LSILRDRISL 780
  781 SAEPETNTTA SGNTQPQSTM PYNQEPTQAQ PNVLANPYDN QYQQPYTDSY YVPQVSHPPM 840
  841 QQPTMFMPHQ AQPAPQPSFT PAPTSNAQPS MRTTFVPSTP PALKNADQYQ QPTMSSHSFT 900
  901 GPSNNAYPVP PGPGQYAPSG PSQLGQYPNP KMPQVVAPAA GPIGFTPMAT PGVAPRSVQP 960
  961 ASPPTQQAAA QAAPAPATPP PTVQTADTSN VPAHQKPVIA TLTRLFNETS EALGGARANT1020
 1021 TKKREIEDNS RKLGALFVKL NSGDISKNAA DKLAQLCQAL DNNDFSTALQ IQVLLTTSEW1080
 1081 DECNFWLATL KRMMVKARQN VR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..163] PSI-BLAST 54.0 No description for 2pm9A was found.
    2 View Details [164..573] PSI-BLAST 74.221849 No description for 2ovpB was found.
    3 View Details [574..797] deduced N/A No confident structure predictions are available.
    4 View Details [798..1016] PSI-BLAST 4.0 No description for 1y0fA was found.
    5 View Details [1017..1102] PSI-BLAST 14.0 No description for 2yruA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.58

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle