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View Structure Prediction Details

Protein: gi|30695806
Organism: Arabidopsis thaliana
Length: 1102 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|30695806.

Predicted Domain #1
Region A:
Residues: [1-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACIKGVGRS ASVALAPDAP YMAAGTMAGA VDLSFSSSAN LEIFKLDFQS DDRDLPLVGE  60
   61 IPSSERFNRL AWGRNGSGSE EFALGLIAGG LVDGNIDLWN PLSLIGSQPS ENALVGHLSV 120
  121 HKGPVRGLEF NAISSNLLAS GADDGEICIW DLLKPSEPSH FPL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.0
Match: 2pm9A
Description: No description for 2pm9A was found.

Predicted Domain #2
Region A:
Residues: [164-573]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKGSGSATQG EISFISWNRK VQQILASTSY NGTTVIWDLR KQKPIINFAD SVRRRCSVLQ  60
   61 WNPNVTTQIM VASDDDSSPT LKLWDMRNIM SPVREFTGHQ RGVIAMEWCP SDSSYLLTCA 120
  121 KDNRTICWDT NTAEIVAELP AGNNWNFDVH WYPKIPGVIS ASSFDGKIGI YNIEGCSRYG 180
  181 VEENNFAPLK APKWYKRPVG ASFGFGGKLV SCHARAPAKG TSSILSEVFL HSLVTEQSLV 240
  241 SRTSEFEAAI ENGDMTSLRG LCEKKSEETE SEEEKETWGL LKIMFEEEGT SRTKLISHLG 300
  301 FTLPVAEKDQ AVDGLSSDLN GIRLEDTAAD ALDLDDSNEA AAFAMDNGED FFNNFPAKPD 360
  361 TPVSTSAKDF MPSDTDFSTK GEETQEMQEE EEESSDPVFD NAIQRALIVG 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.221849
Match: 2ovpB
Description: No description for 2ovpB was found.

Predicted Domain #3
Region A:
Residues: [574-797]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYKEAVDQCI TANKMADALV IAHVGGTALW ESTREKYLKT SSAPYMKVVS AMVNNDLRSL  60
   61 IYTRSHKFWK ETLALLCTFA QGEQWTTLCD ALASKLMAAG NTLAAVLCYI CAGNVDRTVE 120
  121 IWSRSLANER DGRSYAELLQ DLMEKTLVLA LATGNKKFSA SLCKLFESYA EILASQGLLT 180
  181 TAMKYLKVLD SGGLSPELSI LRDRISLSAE PETNTTASGN TQPQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [798-1016]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STMPYNQEPT QAQPNVLANP YDNQYQQPYT DSYYVPQVSH PPMQQPTMFM PHQAQPAPQP  60
   61 SFTPAPTSNA QPSMRTTFVP STPPALKNAD QYQQPTMSSH SFTGPSNNAY PVPPGPGQYA 120
  121 PSGPSQLGQY PNPKMPQVVA PAAGPIGFTP MATPGVAPRS VQPASPPTQQ AAAQAAPAPA 180
  181 TPPPTVQTAD TSNVPAHQKP VIATLTRLFN ETSEALGGA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.0
Match: 1y0fA
Description: No description for 1y0fA was found.

Predicted Domain #5
Region A:
Residues: [1017-1102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RANTTKKREI EDNSRKLGAL FVKLNSGDIS KNAADKLAQL CQALDNNDFS TALQIQVLLT  60
   61 TSEWDECNFW LATLKRMMVK ARQNVR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.0
Match: 2yruA
Description: No description for 2yruA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle