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Protein Overview: gi|30694193, gi|...

General Information:
Name(s) found: gi|30694193 [NCBI NR]
gi|192571722 [NCBI NR]
gi|190886519 [NCBI NR]
Description(s) found:
Found 10 descriptions.
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  • gi|30694193|ref|NP_191074.2| pectate lyase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|192571722|gb|ACF04806.1| At3g55140 [Arabidopsis thaliana] [NCBI NR]
  • gi|190886519|gb|ACE95182.1| At3g55140 [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 331 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: pectate lyase activity [ISS]
    lyase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLPYADAD CSLRALAGRA EGFGRFAVGG LHGDLYVVTS LADDGPGTLR EGGRRKEPLW  60
   61 IVFAVSGTIN LNSYLSVSSY KTIDGRGQRI KLTGKGIRLK ECEHIIICNL EFEGGRGHDV 120
  121 DGIQIKPKSR HIWIDRCSLR DYDDGLIDIT RQSTDITVSR CYFAQHDKTM LIGADPSHVE 180
  181 DRCIRVTIHH CFFDGTRQRQ PRLRFGKVHL YNNYTRNWGI YAVCASVEAQ VFSQCNIYEA 240
  241 GVKKKTFEYY SEKAADKEEA RTGLVRSEND LFLNGAQPSL MTGASEECVF HPSEHYPTWT 300
  301 VEPPSETLKQ IMQICTGWQS LSRPSDHGVP K

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..331] PSI-BLAST 60.09691 1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.142826098671881 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.78

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle