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View Structure Prediction Details

Protein: gi|30694193, gi|...
Organism: Arabidopsis thaliana
Length: 331 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30694193, gi|....

Description E-value Query
Range
Subject
Range
PLY15_ARATH - Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1
314.0 [0..8] [327..133]

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Predicted Domain #1
Region A:
Residues: [1-331]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLPYADAD CSLRALAGRA EGFGRFAVGG LHGDLYVVTS LADDGPGTLR EGGRRKEPLW  60
   61 IVFAVSGTIN LNSYLSVSSY KTIDGRGQRI KLTGKGIRLK ECEHIIICNL EFEGGRGHDV 120
  121 DGIQIKPKSR HIWIDRCSLR DYDDGLIDIT RQSTDITVSR CYFAQHDKTM LIGADPSHVE 180
  181 DRCIRVTIHH CFFDGTRQRQ PRLRFGKVHL YNNYTRNWGI YAVCASVEAQ VFSQCNIYEA 240
  241 GVKKKTFEYY SEKAADKEEA RTGLVRSEND LFLNGAQPSL MTGASEECVF HPSEHYPTWT 300
  301 VEPPSETLKQ IMQICTGWQS LSRPSDHGVP K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.09691
Match: 1pxzA
Description: 1.7 Angstrom Crystal Structure of jun a 1, the major allergen from cedar pollen
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.142826098671881 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle