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Protein Overview: gi|1072776, gi|5...

General Information:
Name(s) found: gi|555045 [NCBI NR]
gi|1072776 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|555045|gb|AAA45371.1| nef protein [NCBI NR]
  • pir||S54385 nef protein - human immunodeficiency virus type 1 (fragment) [NCBI NR]
    • Organism: Human immunodeficiency virus 1
    Length: 97 amino acids

    Gene Ontology:
    Cellular Component: cytosol [UNKNOWNLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article][TAS]
    Biological Process: regulation of defense response to virus by virus [UNKNOWNLink to PubMed articleLink to PubMed article][TAS]
    viral reproduction [TAS]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGRWSKSSI VGWPAIRERI RRTDPAADGV GAVSRDLEKH GAITSSNTRG TNADCAWLEA  60
   61 QEESEEVGFP VRPQVPLRPM TYKGALDLSH FLKEKGG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..64] PSI-BLAST 18.39794 HIV-1 Nef protein fragments
    2 View Details [65..97] MSA 2.01699 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle