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Protein Overview: PUS5_ARATH

General Information:
Name(s) found: PUS5_ARATH [Swiss-Prot]
Description(s) found:
Found 8 descriptions.
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  • RNA pseudouridine synthase 5 OS=Arabidopsis thaliana GN=At3g52260 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 369 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: pseudouridine synthesis [IEA]
    Molecular Function: RNA binding [IEA]
    pseudouridine synthase activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPPPQRIGL PWPELNDGLA YKDAISSSES ELTTVSEFYF TKYKSSAPLL GWIQRIQNGQ  60
   61 IQIDGEVVKD PNTLLRSGSK LVYSRLPWKE PDTPYSLEVL YEDDDLIALN KPSGLQVLPG 120
  121 GLFQQRTVLT QLQWCFGKND SYIGSRESPH PVPVHRLGRG TSGILLCAKT KLAKTKLAAY 180
  181 FAEGTSLVGS GNLDQECGTG RKLSKIYRAL ADGIVEEDEV VIKQPIGVVR YPGVAQGLYV 240
  241 ASPEGKPAFS KVFVLERDRE KNCSLVKVEI QSGRPHQIRI HLAYMGHPLV GDPLYVAGGQ 300
  301 PKCFDPDLVD DAAAFAEDGG YRRPNQAVPG DCGYHLHAHQ VELPNLLNTH KVVKIVAPLP 360
  361 PILQTRCET

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..369] PSI-BLAST 70.221849 Structure of the catalytic domain of 23S rRNA pseudouridine synthase RluD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • pseudouridine synthase activity
    		•  5.60483019625575 bayes_pls_golite062009
  • intramolecular transferase activity
    		•  4.62815459483632 bayes_pls_golite062009
  • isomerase activity
    		•  3.43067391737824 bayes_pls_golite062009
  • catalytic activity
    		•  2.39224964671205 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle