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Protein Overview: gi|42572535, gi|...

General Information:
Name(s) found: gi|42572535 [NCBI NR]
gi|110737454 [NCBI NR]
Description(s) found:
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  • gi|42572535|ref|NP_974363.1| catalytic/ pyridoxal phosphate binding [Arabidopsis thaliana] [NCBI NR]
  • gi|110737454|dbj|BAF00671.1| hypothetical protein [Arabidopsis thaliana] [NCBI NR]
  • expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | catalytic/ pyridoxal phosphate binding | chr3:9543538-9545483 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • hypothetical protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Pyridoxal-5'-phosphate-dependent enzyme family protein | chr3:9542301-9544246 FORWARD LENGTH=433 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Putative uncharacterized protein At3g26115 OS=Arabidopsis thaliana GN=At3g26115 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of A1L4V7, Isoform 2 of D-cysteine desulfhydrase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g26115 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 433 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: metabolic process [IEA]
    Molecular Function: pyridoxal phosphate binding [IEA]
    catalytic activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVQRSTFLA VTGKSNLHHF HSSSQRIPIT SEIDSREFVS KLLDRKWGLQ CPASPIQQIS  60
   61 VSSVKGIDKF SFLNNTRPHL GDEMSKSKQG SSFYILRDDL LHPLVNGNKA RKLDALLPLV 120
  121 EDHKVTDLVT CGGCQSAHTA AVAVSCAERG LRSHLLLRGE QPDVLTGYNL VSTMYGNVQY 180
  181 VPRSRYANRE EMLRTYADLV AGEDGTVLWA KDIVEGRDTM NVAKMDDFSS MKTSRRKVLI 240
  241 VNEGAGDALA LLGMFRLVQH LSQDHLLGKK RPVKFVVDAG TGTTAVGLGV AAMSLGLPWE 300
  301 INAVMLADTL KNYKRHEDHL IAEFSRQFPG SVFCSGLDMN QMIKWIDRQH PRNSFCSCRF 360
  361 GKVLEGEVEM CRKIAQETGV LVDPMYTLAA WETATELVQD EKSSIVVMLH TGGTLGMFGL 420
  421 AQRYKTCFTN LKD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..433] PSI-BLAST 94.69897 X-ray crystal structure of the Tryptophan Synthase b2 Subunit from Hyperthermophile, Pyrococcus furiosus

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.85988364660567 bayes_pls_golite062009
  • lyase activity
    		•  0.92121242786289 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.56

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle