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View Structure Prediction Details

Protein: gi|42572535, gi|...
Organism: Arabidopsis thaliana
Length: 433 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42572535, gi|....

Description E-value Query
Range
Subject
Range
TRPB_TRIEI - Tryptophan synthase beta chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpB PE=3 SV=1
360.0 [0..2] [426..13]

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Predicted Domain #1
Region A:
Residues: [1-433]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVQRSTFLA VTGKSNLHHF HSSSQRIPIT SEIDSREFVS KLLDRKWGLQ CPASPIQQIS  60
   61 VSSVKGIDKF SFLNNTRPHL GDEMSKSKQG SSFYILRDDL LHPLVNGNKA RKLDALLPLV 120
  121 EDHKVTDLVT CGGCQSAHTA AVAVSCAERG LRSHLLLRGE QPDVLTGYNL VSTMYGNVQY 180
  181 VPRSRYANRE EMLRTYADLV AGEDGTVLWA KDIVEGRDTM NVAKMDDFSS MKTSRRKVLI 240
  241 VNEGAGDALA LLGMFRLVQH LSQDHLLGKK RPVKFVVDAG TGTTAVGLGV AAMSLGLPWE 300
  301 INAVMLADTL KNYKRHEDHL IAEFSRQFPG SVFCSGLDMN QMIKWIDRQH PRNSFCSCRF 360
  361 GKVLEGEVEM CRKIAQETGV LVDPMYTLAA WETATELVQD EKSSIVVMLH TGGTLGMFGL 420
  421 AQRYKTCFTN LKD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 94.69897
Match: 1v8zA
Description: X-ray crystal structure of the Tryptophan Synthase b2 Subunit from Hyperthermophile, Pyrococcus furiosus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.85988364660567 bayes_pls_golite062009
lyase activity 0.92121242786289 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle