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Protein Overview: gi|15229409

General Information:
Name(s) found: gi|15229409 [NCBI NR]
Description(s) found:
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  • gi|15229409|ref|NP_188968.1| regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] [NCBI NR]
  • regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • | Symbols: | regulator of chromosome condensation (RCC1) family protein | chr3:8316443-8320344 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • Ran GTPase binding / chromatin binding / zinc ion binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain | chr3:8316436-8320337 FORWARD LENGTH=1045 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Regulator of chromosome condensation-like protein with FYVE zinc finger domain OS=Arabidopsis thaliana GN=At3g23270 PE=2 SV=1 [ARATH-contam.fasta]
  • Regulator of chromosome condensation-like protein with FYVE zinc finger domain OS=Arabidopsis thaliana GN=At3g23270 PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 1045 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPASCYIY HERDVDQALV VLKKGTQLLK YSRKGKPKFR AFRLSPDEKT LIWFSRGEEK  60
   61 GLKLFEVSRI VPGQRTRFLR PEKDHLSFSL LYNNRERSLD LICKDKAETE VWFAALKFLI 120
  121 EKSRNRRARS EIPEIHDSDT FSVGRQSIDF VPSNIPRGRT SIDLGYQNNS DVGYERGNML 180
  181 RPSTDGFRIS VSSTPSCSSG GSGPDDIESL GDVYVWGEVW TEGILPDGTA SNETVKTDVL 240
  241 TPRPLESNVV LDVHQIVCGV RHVALVTRQG EVFTWGEEVG GRLGHGIQVD ISRPKLVEFL 300
  301 ALTNIDFVAC GEYHTCVVST SGDLFSWGDG IHNVGLLGHG SDISHWIPKR VSGPLEGLQV 360
  361 LSVACGTWHS ALATANGKLF TFGDGAFGVL GHGNRESVSY PKEVQSLNGL KTVKVACSIW 420
  421 HTAAIVEVMG QTATSMSSRK LFTWGDGDKN RLGHGNKETY LLPTCVSSLI DYNFHKIACG 480
  481 HTFTVALTTS GHVFTMGGTA HGQLGNSISD GKLPCLVQDR LVGEFVEEIA CGAHHVAVLT 540
  541 SRSEVFTWGK GANGRLGHGD TEDKRTPTLV EALRDRHVKS LSCGSNFTSS ICIHKWVSGA 600
  601 DQSICSGCRQ AFGFTRKRHN CYNCGLVHCH ACSSKKALKA ALAPTPGKPH RVCDACYSKL 660
  661 KAAESGYSSN VNRNVATPGR SIDGSVRTDR ETTRSSKVLL SANKNSVMSS SRPGFTPESS 720
  721 NARASQVPSL QQLKDIAFPS SLSAIQNAFK PVVAPTTTPP RTLVIGPSSP SPPPPPRSSS 780
  781 PYARRPSPPR TSGFSRSVID SLRKTNEVMN QEMTKLHSQQ RCNNQGTEIE RFQKAAKDAS 840
  841 ELAARQSSKH KAATEALKSV AEQLKELKEK LPPEVSESEA FESINSQAEA YLNANKVSET 900
  901 SPLTTSGQEQ ETYQKTEEQV PSNSSITETS SSSRAPSTEA SSSRISGKES KEQFEPGVYV 960
  961 TYEVDMNGNK IFRRVRFSKK RFDEHQAEDW WTKNKDRLLK CYSSNSSSSS SSSNPTASDS1020
 1021 PVAPQPPSDP SVPEQSNEKE PDSET

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..138] MSA 5.159995 View MSA. No confident structure predictions are available.
    2 View Details [139..596] PSI-BLAST 86.522879 Regulator of chromosome condensation RCC1
    3 View Details [597..722] PSI-BLAST 4.39794 No description for 2yw8A was found.
    4 View Details [723..799] deduced N/A No confident structure predictions are available.
    5 View Details [800..1045] MSA 1.134988 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle